Pseudomonas sp. CB1, TD31_RS10020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGTCAGCAACTGGACGCATCCGCCAACACCGTGCTGAAGCTGATGGATGAGCAGAACGCCCTGGGCATCGCGGATGCTCGCATCGTGCTGGCCGGCTT CTCCCAAGGCGGCGCGGTGGTCCTGCATACCGCCTATATCGAGGCCTCACGCTCATTGGCAGGGGTCATGGCCTTGTCCACCTACGCCCCGAGCTTTGGC GAAGTCTTGCCGCTTAGCGCCGTCCAGCAGTCGGTACCGGTCATTTGCCTGCATGGCACCCAGGACGGCGTGGTCCTGCGCAGCATGGGCCGCGCCGCCC ATGACCAGCTCAAGGACGCTGGCGTAGAGGTCAGCTGGCATGAGTATCCGATGGAACACTCCGTGATCGAACAGGAAATCGGCGACATCGCGTCCTGGCT CAAAGCCCGCCTGGGTTGAGCCGCTCGGAGCGCGGCACTACGCCGCGCTCGATTCTTGCATTACACTGCCAGCGAACCTTTCCTTACAATTAATGACGAG
|
|
| DNA Sequence for Gene |
>TD31_RS10020
ATGACCGTGCTCAAAGCACTCAAGAAAATGTTCGGCAAGGGTGAGGCTGAGCCGCTCGCCGCCGCACCTGCTTCTCCCGCCGAGGCGCGTCCAGCACGAC CGGCACCGGCAGTGACTGCCCCCGCTCGCGAATCCCAGCAGGCACCCCGCGGCGCCAAACGCCATGCCACGGCAGCACCAGCACCCACCGCCCCTGTCGC ACCCGCAACACCGCCCGAACGGCCGCGCAAGGCCCGCACCGTAGCGACCAAGGCGCCTGTGAAGCCATGGAACCTCGAAGATTTCCAGGTCGAGCCCCAG GAAGGCAAGACGCGCTTCCACGACTTCCCCCTGCGCCCTGAACTGATGCGCGCCATCCACGACCTGGGCTTCCCTTATTGCACGCCGATCCAGGCCCAGG TGCTGGGCTTCACCCTCAAAGGGCGCGATGCCATCGGCCGGGCGCAGACCGGCACCGGCAAGACCGCGGCCTTTCTGATTTCCACCATCAGCCAGCTATT GCAGACACCTCCTCCGGCCGAACGCTACATGGGCGAGCCCCGTGCGCTGATCATCGCGCCTACCCGGGAACTGGTCGTGCAGATCGCCAAGGATGCCGCC CAGCTCACCAAGTACAGCGGCCTGAACGTGATGACTTTCGTCGGCGGGATGGACTTCGACAAGCAGCTCAAGCAACTGGAGTCGCGCTTCTGCGACATCC TGGTAGCCACCCCGGGTCGCCTGCTTGACTTCAACCAGCGCGGCGAAGTGCACTTGGACATGGTCGAAGTGATGGTGCTGGACGAGGCGGACCGCATGCT GGACATGGGCTTCATCCCCCAGGTGCGGCAGATCATCCGGCAGACGCCACCCAAGAGCGAACGCCAGACCCTCCTGTTCTCGGCCACCTTCACCGAGGAC GTGATGAACCTGGCGCGCCAATGGACTACGGAGCCGGCGATCGTCGAGATCGAGCCGGAGCAGGTGGCCAGCGATACCGTGGAACAGCACGTTTATGCAG TGGCCAGCAGCGACAAGTACAAGTTGCTCTATAACCTGGTGACCAGCCAGGGCTGGGATCGGGTGATGGTGTTCGCCAATCGCAAGGATGAAGTACGTCG CATCGAGGAGCGTCTGGTCAAGGACGGCATCAATGCGGCCCAGCTGTCCGGGGACGTGCCCCAGCACAAGCGGATCAAGACGCTGGAAGCCTTCCGCGCA GGCCAGGTGCAGGTCTTGGTCGCCACCGACGTGGCAGGACGGGGCATTCACATCGAAGGCATCAGCCACGTGATCAACTTCACCCTGCCGGAAGACCCGG ACGACTACGTTCACCGGATCGGCCGCACCGGCCGCGCGGGGACCAGCGGGGTTTCGATCAGCTTCGCTGGGGAATATGACGCTTACCAACTGCCTGCCAT CGAGGCGCTGCTGGGCCGCAAGATCAGCTGCGAGATGCCGCCCGAGGCACTGCTCAAACCTGTGGGGCGGCGTACATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGCAAGCTGTCGGGGACGCCAATGGACCTGGGCCATTTGCGCCGGTGGGAACCAGCGGAGCTGGCGAATGTCAGCTCACTTTCGCTAGCTGTCGCTAGC TCCCACCGTGGGAGGTAGCGAAGCTGCCGAATGCTCAGCTCAATGCTTTCGCTAGCTGCCGCTAGCTCCTACCGTGGGAGGTAGCGGAGCTGGCAAATGT TCAGCTCAATGCCTTTCGCTAGCTGCCGCTAGCTCCCACCCTAGGAGGTAGCGGAGCTGCCGAATGCTCAGCTCAATGCCTTTCGCTAGCTGTCGCTAGC TCCCACCGTGGGAGGTAGCGAAGCTGCCGAATGCTCAGCTCAATGCTTTCGCTAGCTGCCGCTAGCTCCTACCGTGGGAGGTAGCGGAGCTGGCAAATGT TCAGCTCAATGCCTTTCGCTAGCTGCCGCTAGCTCCCACCCTAGGAGGTAGCGGAGCTGCCGAATGCTCAGCTCAATGCCTTTCGCTAGCTGCCGCTAGC
|
|
| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MTVLKALKKMFGKGEAEPLAAAPASPAEARPARPAPAVTAPARESQQAPRGAKRHATAAPAPTAPVAPATPPERPRKARTVATKAPVKPWNLEDFQVEPQ EGKTRFHDFPLRPELMRAIHDLGFPYCTPIQAQVLGFTLKGRDAIGRAQTGTGKTAAFLISTISQLLQTPPPAERYMGEPRALIIAPTRELVVQIAKDAA QLTKYSGLNVMTFVGGMDFDKQLKQLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTED VMNLARQWTTEPAIVEIEPEQVASDTVEQHVYAVASSDKYKLLYNLVTSQGWDRVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEAFRA GQVQVLVATDVAGRGIHIEGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEYDAYQLPAIEALLGRKISCEMPPEALLKPVGRRT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|