Pseudomonas sp. CB1, TD31_RS09550

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. CB1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTGGTGGTGTTCCTGTGCCTGGCGGCCCTGTACGAAAGCTGGTCCATTCCTATCGCGGTGATCCTGGTGGTGCCGCTGGGCGTGATCGGTGCCCTTATCG CTACCAGCCTGCGTGGCTTGTCCAACGACGTGTTCTTCCAGGTAGGCCTGCTGGTGACGGTTGGCCTGGCAGCGAAGAACGCCATCCTGATCGTGGAATT CGCCAAGGAGTTGCACGAGCAGGGCAAGAGCCTGTTCGACGCTGCGGTGGAAGCCTGCCGCATGCGCTTGCGCCCGATTGTGATGACCTCCATGGCCTTC ATCCTGGGCGTGGTACCTTTGGCGATCTCCAGTGGCGCAGGCTCCGGCAGCCAGCATGCCATCGGTACCGGCGTGATCGGCGGCATGATCACCGCGACCA TCCTGGCGATCTTCTGGGTACCCATGTTCTTCGTTACCGTTTCTTCTGTATTCCACGGTCGCAGGAAGCCTAGCGACCCTACACCTGATGAGGCTCGCCA
DNA Sequence for Gene
>TD31_RS09550
ATGAGCAAGTCATTGATTTCCCTGGCAGTGGCCGCCGCGCTCCTGAGCGGCTGCTCGCTGATCCCGGACTATCAGCAACCCGCGGCGCCGGTGCCGGCGC AGTACCCGCAAGGGGCGGCCTTCGCCCCAGCGGACCCGGCCAAGGTCGCCGCCGCCGAGCAGGGATGGCGCGAATTCTTCCGCGACCCGGCCCTGCAACG ATTGATCGAGTTGTCGCTGCAGAACAACCGCGACCTTCGGGTCGCGGCCCTGAACGTGGATGCCTACGCGGCTCAATACCGCATCCAGCGGGCCGACCTG TTGCCGGCCATCAGCGCCGACGGCGCCGGCACCCGCCAGCGCAGCCCGGCCGACCTGTCCACCTCGGGCCGTGCCGGCATTTCCAGCACCTACTCGGCGA CCCTGGGCATCTCGGCCTACGAACTGGACCTGTTCGGCCGCGTTCGTAGCCTCAGCGAACAGGCGCTGGAAAGCTACTTCGCCACCGAAGAAGCGCGCCG CTCGACCCAGATCAGCCTGGTGGCCAGCGTGGCCAATGCCTACCTGACCTGGCAGGCGGACCAGGCCCTGTATGACCTGACCGAGCAGACCCTCAAGGCC TATGAAGAGAGCCTGCGGCTGACCAGCCGCAGCGCCGAGGTAGGCGTATCTTCGGCGCTGGACCTTAGCCAGGCCCGCACCGCCGTGGAAGGCGCTCGCG CCAACCTGGCCCAGTACCAGCGGCAAGTGGCCCAGGACCTGAACAACCTGGCCGTGCTGGTAGGCACCCGCCTGCCCGAGGACCTGCCCCGCGGGCAGCA CCTGGACGGCGACCTGCTCAGCGAGGTGCCAGCGGGGCTGCCTTCCGACCTGCTCACCCGCCGCCCGGATATCCTCCAGGCCGAACATAATCTGAAGGCG GCCAATGCCAACATAGGCGCGGCCCGGGCGGCCTTCTTCCCCAGCATCAGCCTGACGGCCAGCGCCGGTACTGCCAGCGCGGACCTGGATGGTTTGTTCA AGGGAGGTTCGGGACGCTGGATCTTCAGCCCGTCCATCAGCCTGCCGATCTTCAATGCCGGTTCGCTGCGCGCCAGCCTGGACTACGCCAAGATCCAGAA GGACGTGAACGTGGCGAATTATGAGAAGGCCATCCAGACGGCGTTCCAGGAAGTCGCCGACGGGCTGACCGCGCGCAAGACCTATGTGGATCAACTTCAG GCCCAGCGTGACCTGGTCAAGTCCAGCGAGGATTACTACCGCCTGGCGGACCGTCGTTATCGCATCGGTGTGGACAGCCACCTCACTTTGCTCGATGCGC AACGGTCCTTGTTCAGCGCCCAGCAATCGCTGATCAGCGACCGCCTGGCCCAGCTCACCGCCGAGGTGAACCTGTACAAGGCCCTTGGTGGCGGCTGGTA TGAAACCGCCGGGCAAGCCAATAACGCTTCGCTGCAACCGCCAAAGGGTTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCACCCCCCCGCCGTCCGCCGCCGTTACCTGAAGCCAGGGTAGCGGTGGCGCCTTCCCGCCTCGAGCGAACTTCTGCCGCAAACAGCAGCAAAATGCCA CCTTTCCTTCGGCAAGCACCCTGGGATTGAAACAACCCGAGCCGCCCGCCTCGCTTAAGACAAATGCATAGCTGCTTTGCCAAAACCGATACGGCTCAGC GCTTTCTCGCGTCCTTGAGCGGTTCAGGACTTGACGGGCGCATTTATTTAGACAAAAGTCATAGCGCTTTAAAGAAATTTTTACTTACAATCAGATCGGA CATCATAGGACTGATGCCGTAATGTAACCAGGCAGTTAGTGTTCGCCTATCGCCCGGATTACCCGCAGCAGAATTGACCCGAAGGATCGGGCTTAGCACC ATCGGCAAGACGAGGCTACCCGCGCACACGGGCAGTCCGGACCCAAACCAATAACAACAGGTTGGCCACTATGCATATCGCTCGCGCGCTCCCGCCGCAT
Amino Acid Sequence
>adeC/adeK/oprM family multidrug efflux complex outer membrane factor
MSKSLISLAVAAALLSGCSLIPDYQQPAAPVPAQYPQGAAFAPADPAKVAAAEQGWREFFRDPALQRLIELSLQNNRDLRVAALNVDAYAAQYRIQRADL LPAISADGAGTRQRSPADLSTSGRAGISSTYSATLGISAYELDLFGRVRSLSEQALESYFATEEARRSTQISLVASVANAYLTWQADQALYDLTEQTLKA YEESLRLTSRSAEVGVSSALDLSQARTAVEGARANLAQYQRQVAQDLNNLAVLVGTRLPEDLPRGQHLDGDLLSEVPAGLPSDLLTRRPDILQAEHNLKA ANANIGAARAAFFPSISLTASAGTASADLDGLFKGGSGRWIFSPSISLPIFNAGSLRASLDYAKIQKDVNVANYEKAIQTAFQEVADGLTARKTYVDQLQ AQRDLVKSSEDYYRLADRRYRIGVDSHLTLLDAQRSLFSAQQSLISDRLAQLTAEVNLYKALGGGWYETAGQANNASLQPPKG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site