Pseudomonas sp. CB1, TD31_RS07130
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATAGACGCGTTCCTCGACGCGTTTCTTACCCAGGCCATGGATGCCAATGGCCTGGACTACGTAGGCGGCGATGACTTCGGCCTGGTTTGCTCGGCCAAGC GGGGCTCCGTCAGCGAAGAGCAGCGTGCCACCGTCGAAGCCTGGCTCAAGGGGCGCAGTGAATTGACCAAGGTCGAAGTCAGCCCACTGGTCGACGCCTG GTATCCCGAGAAGCCAATCAACAGCCCTAGCTGAAGCGGTCTCGGCCAGGCCGTCGCCTGGCTCGCTCGCTGGAAAGGCCACCCCTGAGGTGGCTTTTTC TTGCCTGGCATCTGCCGCGCGGACAATACCGCAGCGGCCGCGCCTGGCGCTGAACAGGCATGTGGCCAATCAGGCAAATGTCCTCCTTCCTGAAGCTGAC GCCCACAGCGCAGGTGGGCTTGTGCATAATGGCCGCTTTCAGGGGGAGCCTTCATCTCTTCTCGCTCCCGTGTCTTCGCGCGCCAAAGAGCTTCGTCTCC
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| DNA Sequence for Gene |
>TD31_RS07130
ATGATCAAACCACTACGTTCGCTGTTTATCACTGGCCTGCTAATGGCCGCCGCTACCTCCCTTCATGCCGCGCCAGGCGACCTTACTCCCAAGGTGACCC AGGCGCTCAAGGCCAGCAAGCTTACCGACAACGCGCTTTCCCTCGCCCTGATACCCCTCAACGGCCAGGGTTCCAGCACCTTGTTCAATGCGGATGTGTC GGTCAATCCTGCCTCCACCATGAAGCTGGTCACCACCTTCGCCGCCCTGGAACTGCTCGGCCCCACCTTCCAGTGGAAAACCGAGTTCTATACGGACGGC ACCTTGAGCGGCGGCGTACTGCATGGAAACCTCTATGTAAAAGGCGGAGGCGACCCCAAGCTGAACATGGAAAAGCTCTGGCTGCTGATGCGGGACCTGC GCGCCAACGGCGTACAACAGGTTACTGGCGACCTGATCCTGGACCGCAGTTTCTTCAAACAACCGCAGTTGCCGGCATTCAATGACGACGGCAATGACGA GAACGCGCCTTTCCTGGTGCGCCCGGACGCCTTGATGATCAACCTCAAGGCGCTGCGTTTCGTCGCGCGCAACGATGGTGGCAAGGTCACGGTCGCCGCG GAACCGCCGATCCGCACCATCCGGTTGGACAATCAGGTAAAGGCGGCTTCGGGTAGCAAATGCGTAGGCGACGTGCGTTATAACGCGGTGCCCCAGCCAG ACGGCATCAATGTCATTGTCAGCGGTCAACTCGCAGACGGATGCAACTCCCAGACATACCTTTCACTGCTTGACCACTTCGCTTACTCGGCCGGGGCAAT CCGGGCGATCTGGGGCGAATTGGGCGGCACCATCAATGGTGTGGACCGTGACGGCAGTGTGCCTCGCAATGCGCGCCTGCTGGCCCGGGCGTTTTCGCCT GACTTGGTCGAGGTCATCCGCGACATCAACAAATACAGCAACAACACCATGGCCCAGCAGTTGTTCCTGACCATAGGCGCCTTGAACCGTACCGCTGCGG ATGAAGACGACGCCAAGGCGGCCCAGCGGGTGATCCGGCAATGGCTGGCGAAGAAAGGCATGGTAGCGCCCCATCTGGTGATGGAAAACGGCAGCGGCCT GTCCCGGGCCGAACGGGTAAGCGCCCGGGAAATGGCGGCTCTGCTGCAAGCCGCCTGGCGCAGCCCCTACGCTGCGGAATTCATGAGCTCCATGCCCCTG GTGGGCATGGACGGCACCATGCGCAAGCGCCTGAAGCGCACCGCCATGACCGGCGAAGGGCACATCAAGACCGGGACCCTGAACACCGTCAGGGCGATCG CCGGGTTCAGCCGGGATGTGAACGGCAATACCTGGGCCGTGGTCGCCATCCTGAACGATCCCAAGCCCTGGGGCGCCCGCTCGGTGCTGGACCAGGTGCT GCTGGACCTCTACAACCAGCCCCGCATCGCCAACACCGCCGCCCTGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGGGCAGCTGTGCTGGCCTCGACGCCCTTTAGCGGGCCTGAATGCGCCAGGCCTGGTGGATCTTCTCATTACGCGCGAAGTCCGGGTCCAGGGTCTGG CGAGTGATGTCCTCGACGGCATAGCGGGCCGCGACAGTTTCATCTAGGCGGAAGCGACGGAAGTTGTTGGAGAAGTACAGGGTCCCGCCCTCGGCCAGGC GGGCCATGGCCAGGTCCAGCAAGCGTACGTGGTCGCGCTGGACGTCGAACACCCCTTCCATGCGTTTTGAGTTGGAGAAGGTCGGCGGGTCTATGAAGAT GAGTTCGTATTCGCCCCGGTCCTGCTCCAGCCAGGCCATGACATCGCTGTGCATCAGCTGGTGCCGCTCGGAGAAACCGTTGAGCGCCAGGTTGCGCCGG GCCCAGTCCAGGTAGGTGCGCGAAAGGTCCACGCTGGTGGTCGCGCGGGCCCCACCCTTGGCGGCATGTACCGTGGCAGTGGCGGTGTAGCAGAACAGGT
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase
MIKPLRSLFITGLLMAAATSLHAAPGDLTPKVTQALKASKLTDNALSLALIPLNGQGSSTLFNADVSVNPASTMKLVTTFAALELLGPTFQWKTEFYTDG TLSGGVLHGNLYVKGGGDPKLNMEKLWLLMRDLRANGVQQVTGDLILDRSFFKQPQLPAFNDDGNDENAPFLVRPDALMINLKALRFVARNDGGKVTVAA EPPIRTIRLDNQVKAASGSKCVGDVRYNAVPQPDGINVIVSGQLADGCNSQTYLSLLDHFAYSAGAIRAIWGELGGTINGVDRDGSVPRNARLLARAFSP DLVEVIRDINKYSNNTMAQQLFLTIGALNRTAADEDDAKAAQRVIRQWLAKKGMVAPHLVMENGSGLSRAERVSAREMAALLQAAWRSPYAAEFMSSMPL VGMDGTMRKRLKRTAMTGEGHIKTGTLNTVRAIAGFSRDVNGNTWAVVAILNDPKPWGARSVLDQVLLDLYNQPRIANTAALP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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