Pseudomonas sp. CB1, TD31_RS03810
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACAACCCGGACCTGAAATTCCTCTTCATCTACGCCGTGCTGTTCATCGTGGTAATGCTGGTGCTCTATATCAAGCACCGACTGACCCGCATGCCGATAG GGCGGGCATGGGAAGCCCTGCGTGAAGATGAAATCGCCTGTCGCGCCATGGGCCTGAACCATGTGCTGGTCAAGCTTTCAGCCTTTACCCTGGGTGCTTC CACCGCGGGCCTGGCAGGGGTGTTCTTCGCCAGCTACCAGGGCTTCGTGAACCCCACCTCCTTCACCTTCTTCGAGTCGGCGCTGATCCTGGCGATCGTG GTACTTGGTGGCATGGGCTCGACGGTGGGCGTGGTAATCGCCGCCTTCGTGCTGACGGTAACGCCGGAACTGCTACGCAGCTTCGCTGAATACCGGGTGC TGCTGTTCGGCATCCTGATGGTATTGATGATGATCTGGCGGCCACGTGGCCTTATCCGAATCAGCCGCACTGGGGTGGCGCCGCGTAAAGGAGTCGCACC
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| DNA Sequence for Gene |
>TD31_RS03810
ATGAGCGACGACATCATTCTCTCTGTAGAACACCTGATGATGCAGTTCGGCGGCATCAAGGCGCTCAGCGATGTGAACCTGCAGGTTCGAAGAAACTCCA TCTTCGCCCTGATCGGCCCCAATGGGGCTGGCAAAACCACGGTGTTCAATTGCCTCACCGGTTTCTACAAAGCCAGCGGCGGCCGCATCCAGCTCAATGC CCGTCATGGCAGCGTGGAAGTGATCAAGTTGCTGGGCGAGTCCTTCAAGGCCTCGGACTTCGTTGCCCCGAGCCGCTTCTGCAGTCGGCTCTATTACAAG ATGTTCGGCGGCACCCATCTGGTGAACAGAGCAGGCCTGGCGCGCACCTTCCAGAACATTCGGCTGTTCAAGGAAATGTCAGTGGTGGAAAACCTGCTGG TGGCGCAGCACATGTGGGTGAACCGCAACCTGCTGGCGGGTATCTTCAATACTCCTGGCTACCGTCGAGCCGAAGCCAAAGCCATGGACACGGCCTTCTA CTGGCTGGAAGTGGTGGACCTGGTGGACTGCGCCAACCGGTTGGCCGGCGAGCTTTCCTATGGGCAGCAGCGCCGCCTGGAGATCGCCAGGGCCATGTGC ACCCGCCCGCAGGTTATCTGCCTGGACGAACCGGCCGCGGGCCTCAACCCGCAGGAAACCGAGGCCCTGAGCGGCATGATTCGCCATTTGCGTGACCATC ACGACATGACCGTGGTGTTGATTGAGCATGACATGGGCATGGTGATGAGCATTTCCGATGACATCGTGGTACTGGACCACGGCAACGTGATCGCCGCGGG CAAGCCTGAGCAGATTCGCAACGACCCCAAGGTGATCGCTGCCTACCTCGGCGCGGATGAGGAGGAACTCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGCCTATTCTGGAGCTCAAGGGCATCGACGTTTACTACGGGCCTATCCAGGCTTTGAAGGACGTTTCCTTGCATATCGACCCGGGGGAAACCGTGAG CCTGATCGGCGCCAACGGCGCCGGCAAGTCCACCTTGTTGATGTCCATCTTCGGGCAGCCACGGGTTGCCAAAGGACAGATTCTGTACCAGGGCACGGAT ATCAGTCAGAAATCGTCCTATTACATTGCCTCCAATGGTATCGCGCAGTCCCCGGAGGGGCGTCGGGTGTTCCCTGACATGTCCGTGGAGGAAAATCTGA TGATGGGTACCATCCCCATTGGCGACAAGCATGCTGACGAAGATATGCAGCGGATGTTCGCGCTCTTCCCACGGCTCAAGGAACGCCGTAACCAGCGCGC GATGACCATGTCAGGGGGCGAGCAGCAGATGCTTGCCATCGCCCGGGCGCTGATGAGCAGGCCGCGCCTGTTGCTACTGGACGAACCCTCCCTGGGCCTG
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| Amino Acid Sequence |
>ABC transporter
MSDDIILSVEHLMMQFGGIKALSDVNLQVRRNSIFALIGPNGAGKTTVFNCLTGFYKASGGRIQLNARHGSVEVIKLLGESFKASDFVAPSRFCSRLYYK MFGGTHLVNRAGLARTFQNIRLFKEMSVVENLLVAQHMWVNRNLLAGIFNTPGYRRAEAKAMDTAFYWLEVVDLVDCANRLAGELSYGQQRRLEIARAMC TRPQVICLDEPAAGLNPQETEALSGMIRHLRDHHDMTVVLIEHDMGMVMSISDDIVVLDHGNVIAAGKPEQIRNDPKVIAAYLGADEEELA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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