Pseudomonas sp. CB1, TD31_RS02490 (fecE)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACTGGCTGGTCACCAATACCACCCTGGACACGGCAGTCTCGGCGGGCTTGTGGAATGCCGGCTCGCTCAATGGAGTGACCTGGGCCAAGGCCGCGCCAG CGCTGGCGATCATCGGGCTGGCGCTGATCGCCGCCTTGCTGTTGAGCCGGCGCATGCGCCTGCTCGAAATGGGCGATGACCTGGCCTGTGCCCTGGGCGT ACCCGTGGAGCGCTCGCGGCTGTGGCTGTTGCTGGCAGGTATCGCCTTGGCCGCGGCGGCGACCGCGGTGGCAGGGCCCATTGCCTTCGTGGCCCTGGCC GCGCCTCAGATCGCCCGTCGCCTTAGCGGCGGCCAAGCCCTGGCGTTGCCCATGGCCGCGCTGAGCGGAGCGTTTCTGCTGCTAAGCGCGGACTTCACCG CACAACACCTGCTCAGCCCCTATCAAGTGCCTGTTGGCCTGATCACTGTGAGTGTGGGCGGGCTGTACCTGATCGCTCTGCTGATTCGCGAGGCTCGTCG
|
|
| DNA Sequence for Gene |
>TD31_RS02490
|fecE
ATGACCCTACGCCCCCCTGTTGCCAGTCGGCTCAGCGCCACGGACCTGACCCTCGCCTACGATGGCAAGGTGGTGGTGCGTGACCTTTCGGTGGCTATCC CGGAAGGCGAGCTGACCGTGATCATCGGCCCGAACGCCTGTGGCAAGTCGACCCTGCTGCGCAGCCTTAGCCGTCTGCTGCAGCCGGCGGGCGGGCAGGT GTGGCTAGACGGTCAGGCGATTCATGCCTACCCCACCAAGGAAGTGGCGCGGCGCCTGAGCCTGCTACCGCAAAGCGCCAGCGCCCCAGGGGATATTACC GTCAAGGACCTGGTCGCCCGGGGCCGCTATCCTCATCAAGGCCTGCTCAGCCGCTGGCGGGCCGAGGACGAACGCGCCGTGCAAAAGGCCATGGCGGCCA CCGGCGTCGACGGCCTCTGGGCCGAGCCTGTGGATACCTTGTCTGGCGGCCAGCGTCAGCGGGTATGGATCGCCATGGTACTGGCCCAGCAAACCCCACT GGTATTGATGGACGAACCCACCACCTGGCTGGACATCACCCATCAGATCGAACTGCTCGAGCTGCTCGAACACCTGAACCAGGACCACGGCCATACCCTG GCGGTGGTCTTGCACGACCTCAACCAGGCCTGCCGCTACGCCACCCACCTGATCGCCATGCGCGACGGCAAGATCGTCGCCGGCGGGCGTCCCAAGGACA TCGTCACGGTGGAGCTGATCCAGCAGGTGTACGATCTGCCCTGCACCATCATCGAAGATCCGGTTGCCCATACCCCGCTGATCATTCCGTTGGGTAGCCG CCCTGGCCGACGCGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCCAGCGAACCCTGTAGGCGCCAGCGCTAGCCGGCGAATGGGTGCATAGCCGTGTCACCCATTCACCAGCTAGTGCTGGTTCCCACAGGGTACGCGCCCC GCTTTTACAACGCCTTCAAGGCACGGTTGATCATCGGCCCCACCTGGGCCAGCATCGCTGGCGAGATAATGTCCACGTGGGCGCAATCCAGGCGTTGCAC GGCCAGCTTGTCGACGAAGCGGCCCCAGGTCTGGTTCACGTCCATACCCAGGGGCAGGGTCTTCTCCGCCACGTACAAGGTGGCAGTACCCGCGAAGTGA ACACTGCGTGCGGTCGCCAGCAGGCGCACGGCGTCGCCGTAGTTGGCCTCGATCTGCTCGAACAACCGGGTTCCGCCTTCGCCCCCCGCTTCGCCCAGCA CGCCGCGCTGAGCCGCCAGGAACTGTTCCCGCTCCCGGTTCACTTCCGCCAGCACTTCCGGGTCCAACTGGTGCTGGCCGGCGCGTTCGTCCCAGTTCTG
|
|
| Amino Acid Sequence |
>iron-dicitrate transporter ATP-binding subunit
MTLRPPVASRLSATDLTLAYDGKVVVRDLSVAIPEGELTVIIGPNACGKSTLLRSLSRLLQPAGGQVWLDGQAIHAYPTKEVARRLSLLPQSASAPGDIT VKDLVARGRYPHQGLLSRWRAEDERAVQKAMAATGVDGLWAEPVDTLSGGQRQRVWIAMVLAQQTPLVLMDEPTTWLDITHQIELLELLEHLNQDHGHTL AVVLHDLNQACRYATHLIAMRDGKIVAGGRPKDIVTVELIQQVYDLPCTIIEDPVAHTPLIIPLGSRPGRRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|