Pseudomonas sp. CB1, TD31_RS01550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAGGCAGCCCTGCTCGAGGCCCAGGTTGCGGTGGACGCCGCCCAGCTGAACCTGGATCGCTCGGTAGTGCGCAGCCCGGTCAATGGCTATGTGAACG ATCGCGCTCCCCGGGAGCACGAGTTCGTCAGTGCGGGTCGCCCGGTGCTCTCGGTGGTCGATGCCGATTCCTTCCACATCGATGGCTATTTCGAAGAAAC CAAGTTGCCTCATATCCATGTCGGCCAGGCGGTGGATATCCGCGTCATGGGCGACACGGCCCGTCTGACCGGGCATGTGCAGAGTATCTCCGCGGGTATC GAAGACCGCGACCGCAGCAGCGGTAGCAACCTGCTGCCCAACGTAAACCCTGCCTTCAGCTGGGTACGCCTGGCGCAACGTATCCCGGTGCGGATCGCCT TCGACCAGGTGCCGAAGGATTTCCGCATGATCGCCGGGCGTACCGCCACGGTGTCCTTGCTCGATGATGCGCGGGCAGCGGGACAGCCGGAGGCGGCGCA
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| DNA Sequence for Gene |
>TD31_RS01550
ATGAACGGTCTGTGGCGAGCCCTGACGCTGACCGGTCTGGTGACCGGGCTAGTGAGCCTGGCGGCCTGCCAGACCGTGGGCCCGGACTATCACCTCCCAG CCAACGCGGCGCTGCAGCGTCCCGACCTGCAAGGCAATCTCGGTACCGACAACCCCAACGTAGTATCGGCGCCTGTGCCGAACGATTGGTGGCGGCTGTA CCATGACCCGCGCCTGGATGCGCTGGTACGCCAGGCCCTGGCGTCCAACACCGACTTGCGTGTGGCGGCGGCGAATATTGCACGGGCACGCTACCAGACC GAGCAAGCCAAGGCGGAGGGCGGGTTCAATGCTAGTATCAGCGCCGAAGCCCAGCGCCTGCAGGAGTCGGGGCAGGCGTTTCTGCTTACCGAGAAGGTGC CGGTGGACAACATAGGCGCGGCCTCCATCAAGACGTCCTACCAGTTTGACCTCTGGGGCACGCTCAAGCGCGGCGTGGAAGCGGCCAATGCCAATGCCGA CGCGGCCCAGGCCGCGGCCGATACCGCGCGCATCACGGTGGTGGCCGACGTAGTGCGGGCCTATACCCAGGTGTGCGCGGCCAATGAAGAGCGTGACATC GCCCTGCGCTCCCTGGAATTGCAACAGCAAGGGGTAGACTTGGCACAGCGCCTGCGTGACGCAGGGCGCGGTGATGAAACCCAGGTCACCCGCACCCAGA CCCAATTCAAATCCCTGCGTGCCGAGCTGCCGCGCTACCAGGCCGAGCGCGCCGCGGGCCTGTATCGCCTGTCCATGTTACTCGCCAGGCCTGTGGAGCA ATTGCCCGCCGGGGTAGGGGATTGCGCGGAACTGCCCCATATCGCCCAGCTATTGCCTGTAGGCGATGGCAGCAGCCTGCTCAAGCGCCGTCCGGACATC CGCCGGGCCGAGCGCCAGCTGGCCGCCGCCACAGCCCGTATCGGGGTTGCGACCGGCCAGCTGTACCCGGACATCAGTATCGGCGCCACTGTGGGTACCG TAGGGCTGTTGGAGGATCTGGGCGGGCCGGCCACCAACCGCTGGGGCTTCGGCCCGATGATCAGCTGGACGGTACCCACCAACGGCGCCCGCGCCCGTAT CCGCGAAGCCGAGGCGGCCACTCAGGGTGCCCTGGCCAGTTTCGATGGGGTGGTGCTCAATGCCGTGCGCGAAGCGCAAACCAGCCTGTCGAGCTATGCC GCGGCCCTTGAGCGTCGCGATGCCCTGGCCGAAGCCGAACGCTCAGCCCACCAGGCCGCGGACCAGACCCATCAGTTCTACCTGGCCGGACGCCAATCCT TCCTGGAAGACCTCCAGGCCACCCGCACCTATACCAGCGCCCGCGCTCAGCTGGCCGAAGCCAACACCCAGGTCGCCATGCTCCAGATCGACCTCTTCCT GGCCTTGGGTGGCGGGTGGGAGCGGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAACCGGCGAAGCGATGAACCCGATGGGAGCCTGCGAAGCTGACGAACTGTGCTCGATCAGAAAGCCTTTTCATCACCTCGCGGTTCAATCAATGGGGTC AGTTCACCCGGTGGGAGCCAGCGGAGCTGGCGAAGGTGGTATCACCGCAACAGACTGAACGCGCCCTTGGCGCCGCGCTTGATGCGTTCCAGCTCGCGGC TGACGGAAAAGGCCCCGGCTTCGCGCCGACGCCGGTTGAGTTGCACATTCACCGCCTTGGCATACAACCCCTGAAGCCGCTCTTGCAATTGCACCAAGCC AAAGGCGGGCTGGCCTTGGGGTAGCGCGGTCAGGATGAGGTCGGGCAGGTCCAGCAGCTGAGCGTTGTAGGCCAGGGCGTCGCCGGCGGCGCGGGCGGCC TTGCTACCATCGTCCAGGCTAAAGGCCGCGGGCCAGCTGCCAGCGGGTACCAGCCGATCGCCCTGGGTAAGGATCCCCAGTATCGCCGCTGGCTCGTGCT
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| Amino Acid Sequence |
>RND transporter
MNGLWRALTLTGLVTGLVSLAACQTVGPDYHLPANAALQRPDLQGNLGTDNPNVVSAPVPNDWWRLYHDPRLDALVRQALASNTDLRVAAANIARARYQT EQAKAEGGFNASISAEAQRLQESGQAFLLTEKVPVDNIGAASIKTSYQFDLWGTLKRGVEAANANADAAQAAADTARITVVADVVRAYTQVCAANEERDI ALRSLELQQQGVDLAQRLRDAGRGDETQVTRTQTQFKSLRAELPRYQAERAAGLYRLSMLLARPVEQLPAGVGDCAELPHIAQLLPVGDGSSLLKRRPDI RRAERQLAAATARIGVATGQLYPDISIGATVGTVGLLEDLGGPATNRWGFGPMISWTVPTNGARARIREAEAATQGALASFDGVVLNAVREAQTSLSSYA AALERRDALAEAERSAHQAADQTHQFYLAGRQSFLEDLQATRTYTSARAQLAEANTQVAMLQIDLFLALGGGWER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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