Pseudomonas sp. CB1, TD31_RS00440
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. CB1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCTTTGCTCGCTCCCGTCGCATTGGCGAAAGCTAACCCTAAAGCACTGGACCTGGAAATTGAGAAACAAAACCAGAAATCCTTGGAAGCCTATTCCCAG CAAACGGGTAAACCCGTACCAGAGGTAGTGGATTACCGTTACGGTATGAAGCTGGATGTAGCAAAACTGATCTACACTTCCCGCCCTGTAATATATTGCG GAGTCGTCAGTAAAATCATGAGCTTTGAGGACTCGCAAGGGGAGCCTCAATCGGTTCGGTACCGCGACCAAGGTGAATGCCGCACCAGGCATTAAGGTTG GTTTTTGCACTCGGACTTTTGAGCTTTAGTGAATGTAGAATTATATCGAACATTTCAGAATTGTAATTCTACGATCACCTTGCCGTTATCCTATTCCGTT GAAGATGGTGGTACCGCTTTGCGGTAAACAATAAATGGAGCGCGCTATAACGTTGCCCAGCCTTATTATCCAGGTACTGCCAAGGAATCAGGAGCAGATG
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| DNA Sequence for Gene |
>TD31_RS00440
ATGTACAAAATCCCAATTTTCAGCCTGAGCGCATTGTGCGCCGTGCTGGCTTGCCAGGCCAATGCCGAGGATGCCGTTGAAGCCAAAGAAGGCTTTATCC AGGGCAGTAGCTTGAACATACTTAATCGCAATTTCTATATAAACCGGGATTACCGTAAGGGGCAGTCCGATGCGTCCGGCGACAGCTACTCCGAGGCCTG GGCCCAGGCAGCCATCGCCCGCTTCGAATCCGGCTTTACCGCCGGCACAGTAGGCTTTGGTTTTGATGCCTTCGCCATGGTGGGTTTGAAGCTCGATAGC GGTAAAGGCCGCTATGGCCCGGGCGGTAGTATCAATGTAATGCCCGTCAATGATGACGGACGGGCAGATGATGAATATGTCAAAGCGGGTGGAGCTCTCA AAGCCCGGCTATTTGATACCGTTATCAACGTCGGAGACGTCTCCCCCTACACGCCGGTTCTGGCCGCCGGTGATTCCCGGTTGCTGCCTGAAAGCTTTAA AGGGTTTACCGTTACCAACACCAGTATCGACAAGCTGACACTGATGGGCGGCCGGGTCCACGCCATGAGCCAGCCACAGGACACAAGTCTTAACGAGAAT TTTGCGACCTTTTACGCAGGGCCAGTCGATTCGCCCTGGGCTGGATATGTAGGGGGAAATTACGAGCTGAATAAAAACCTCACGCTGGGTTTATACACCG GTCGCCTCAAGGACGCCTGGGACCAGCATTACTTTGGCGTCAACTACAGCTACCCCATAAACGACAACCTTGCGCTGTTCGCGGACTTTAACTATTACAA TGCTACCGATGAAGGAAAGCGCTTGCTGGGTGAATTCAGCAACAATATCTTCAGTGGTCGTATTGGCGCTACTTATGGCCCTCATACCCTGGCGTTTTCA GCGCAGAAGAACAACGGGAGCGATGACTTCGATTATCTTCGGCAATCGGACTCCATATACCTTAACAACTCTATCCAATACAGCGATTTCAACTCGCCGA AAGAAAAATCCTGGATGGTCAGCTACCAAATTGACATGGGCCATTTTGGCGTGCCCGGTTTGACGCTCATGACGCGTTACGCCCAAGGGCGTGATGCCGA CTATTCAGGGGCAAACGATGTGTACATGCGTCGCGATGGTGATGGCAATCCGCTCTCTGACCAGAAGCGTTGGGAACGTAACCTCGAGGCGAAGTACGTC GTACGCAGTGGTACGCTCAAGGATGCCTCGTTCCGTCTGCGTCAGGCGACCACCCGTGCCACCGCATTTGAATCGGATCTGGATGAAATCCGCCTGATTG TAGAATACCCGCTTTCCGTGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCCCTAGGACAGCAGGCGCCCAGCTTGCTGTTCTCTCTGCCGTCCTCCCCTCTCTGTCCCCTGCCGCTGACGTGAAATCGTAGGAACCCTCGCAGTGA GGCGTTACCCAACGTTCGTATTCCTATTATCGATTCAAGGAGGCACCGATGGGTGCAGGCCATTCGCACAGCCATGGCGATGTTCGCGAAGGACATCAGA AAAAACTGGTTATTGCCTTGGCAATGACCACAGGCATCATGCTGGCTGAAGTCATCGGTGCATGGGTGACAGGAAGCCTTGCACTGCTTTCCGATGCCGC ACACATGTTTACGGATGCGGCAGCACTGGCCTTGTCATTAGTGGCCTTGCAAATTGCCAAACGACCCGCTGATCGCCGGCGGACTTACGGGTACGCCCGC CTGGAAATATTGGCCTCAACGTTCAACGCTATGCTCTTGTTCCTGGTGGCCATGTACATCTTGTACGAGGCGTGGCAGCGGTTCTTCCTGCCGGCGGAAA
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| Amino Acid Sequence |
>porin
MYKIPIFSLSALCAVLACQANAEDAVEAKEGFIQGSSLNILNRNFYINRDYRKGQSDASGDSYSEAWAQAAIARFESGFTAGTVGFGFDAFAMVGLKLDS GKGRYGPGGSINVMPVNDDGRADDEYVKAGGALKARLFDTVINVGDVSPYTPVLAAGDSRLLPESFKGFTVTNTSIDKLTLMGGRVHAMSQPQDTSLNEN FATFYAGPVDSPWAGYVGGNYELNKNLTLGLYTGRLKDAWDQHYFGVNYSYPINDNLALFADFNYYNATDEGKRLLGEFSNNIFSGRIGATYGPHTLAFS AQKNNGSDDFDYLRQSDSIYLNNSIQYSDFNSPKEKSWMVSYQIDMGHFGVPGLTLMTRYAQGRDADYSGANDVYMRRDGDGNPLSDQKRWERNLEAKYV VRSGTLKDASFRLRQATTRATAFESDLDEIRLIVEYPLSVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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