Pseudomonas sp. C5pp, RR51_RS24025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig37, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACACCTTCTGCGGGGCCGCCCTCGAGCAGCACGGTGGACGCACGCCCTCATTCAAGAGCCGCCGGGTACTGGACCTGATCGGCAACAATGCCCCCGAC CCACAGGGCTCGCTGCACAGCGCCTTCCTGCGCATGATCGACTTCATCGCGGGGATGACCGACAGCTATGCCAGTGAAATGGCCCGGGAAATGACCGGGC GCTCCAGCCCGACCTGAGCCCTGCCGGTGCAGCCCGGACATCGCCCGTAGCTGCACCGCACATTGTGGGAAACTTCCTACATATACTGGCGACAAGTTAA ACGGCACGAATAAAAGTAAATGAAAAGTTACCAATCACGCTTTGACAATGAATTAAGCACGCTTATTTCGTAGCCCGAATTGTTTTATCTTGTAAGCCAT TTCCCATATAGGGCTAATAGCCCTTCCTCGCATGCCCGATGACTTTCAACTGCGATAAGGTGCCGCCTGTCACCCTCAATCGCCCGCAGGGAAGTTGAAC
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| DNA Sequence for Gene |
>RR51_RS24025
ATGCATTCCATATTTATCGTCGACGACCATCCCGTCATCCGCCTGGCCGTTCGTATGTTGCTGGAAAACCAGAATTACAAGATTGTCGGCGAGTCGGACA ACGGCGTGGACGCCATGCAGATGATTCGCGAAGCCGCGCCAGACCTGGTCATCCTCGACATCAGCATCCCCAAACTGGACGGGCTGGAGGTGCTTGCTCG GTTCCAGGCCATGGCCTTGCCCGTGAAGGTACTGGTACTGACCGCGCAATCTCCCGCATTGTTTGCCGTACGCTGCATGCACTCGGGTGCTGCAGGCTAT GTGTGCAAGCAGGAGGACCTGAGCGAACTGCTCAGTGCAGTAAAGGCCGTGCTGGCTGGTTACAACTATTTCCCCAGCCAGGCAATCAAGCATAACCAGG CGGTAGATGCCGACCTGCAACTTTTCCGTCAGGTGAATGACCGCGAACTGATGGTGCTGCAACTATTCGCCCAGGGCCGCAGCAACAAGGAAATTGCCAA AGGCATGTTCCTCAGCAGCAAGACCGTCAGTACCTACAAGAAGCGCCTCATGCACAAACTTCAGGTCAATACGCTGGTCGATCTGATTGAAATGGCCAAA CGCAACGCGCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGTAGTCATGGCGCACAGTATCGCTCGCCTACTGCTCACCCTGCTCCTGTTCAGCGGCGTGGCACAGGCTACCCATCACGAGGCTTCATCCTATACCTT GCTGGCACGCTCATCGGCCAGGCCGGCATTACCAGCGCTCACGGACGAACAACGGCAATGGCTCGAAGGCCGTCAGGAACTGGTGCTGGGTACCTCGGCA CCAGACTACCCGCCGTTCGACATCACCAGTGGGGGCCGCGACTACCAGGGCCTTACCGCCGAGTACGCAAGCCTGATCGGCAAGGCCCTGCAATTGCCCG TGCGGGTGCTGCGCTTTTCCAGCCGGCAAGCGGCGGTCGAGGCGCTCCGGCAGGGCGATATCGACCTCCTTGGCAGCTCCAACGGCTACGAAGCGGCCAG CGATGGCCTGGCCCTGTCGGCCCCCTATGCCATCGACCAACCGGTGCTGGTAACGCGCGAGGACGAAAGCCGGGCGCTGGACACAGGCCTGGGCGGCATG
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| Amino Acid Sequence |
>LuxR family transcriptional regulator
MHSIFIVDDHPVIRLAVRMLLENQNYKIVGESDNGVDAMQMIREAAPDLVILDISIPKLDGLEVLARFQAMALPVKVLVLTAQSPALFAVRCMHSGAAGY VCKQEDLSELLSAVKAVLAGYNYFPSQAIKHNQAVDADLQLFRQVNDRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMHKLQVNTLVDLIEMAK RNALV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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