Pseudomonas sp. C5pp, RR51_RS21945
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig30, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTGGCCGACGCGCGCGCGGATTTCCACCCCGGCTGGTGTCGGCAAGTCTTGACCTTGCCCCGATGGCAAGCTTGAGACTTGTGGAAAACCTGAAGGAG GTAACCCCCATGCAAGTGTTCAATGTACAAGGCATGACCTGTGGCCATTGCGTGAAAGCCGTGACCCGGGCAGTGCAGGAGCAGGATGCCGCGGCCAAGG TGGAGGTCGATCTGGCGGCCAGGCAGGTACGGGTGCAGAGCGAGTTGGCTCAGGAGCGGATCCTCACGGCCATTCGCGATGAAGGTTATCAGGTCGAGGC GGCCTGAATACTGACCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGTAGCCGGTGCCATCCACCGCGCCGCCTGATTCGCGGGCACGCCCGCTCCCAC AGGGGGCGCTCCAGGCTCGGTATTGTTGCAAATGTTTTCACATCGATAGGGGCCACAGCAGGTAGAATCGAGCACTTGCTTAGCCTGCTATGGATTCCTG
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| DNA Sequence for Gene |
>RR51_RS21945
ATGAACCTGCGAATGGTGCTCATCCTGGGCGCACTCAGTGCGTTCGGGCCCTTGGCGATCGACTTCTACCTGCCCGCCTTCCCGGCCATGGCGCAGGCGT TCGCCACCGATGAAAAACACGTCCAGGCCACCTTGGCCGCCTACTTCCTTGGCCTGTCCTTCGGGCAACTGGCCTACGGGCCGGTGGCTGACCGCTTTGG CCGACGCAAGCCGCTGATGTTCGGGGTGACCCTGTTCACCCTGGCGTCACTGGCATGTGCCTATGCCCCCGACCTCGATACCCTGGTGCTGGCGCGGTTT GTCCAGGCGTTGGGCGGTTGCGCCGGGATGGTGCTTTCGCGGGCCATCGTCAGTGACAAGTGCGACCCGGTGGCCTCGGCCAAGGTGTTCTCGCAACTGA TGCTGGTCATGGGTCTGGCGCCAATCCTGGCACCGATGCTGGGCGGGGTGCTGGTGAACGTGGCCGGCTGGCAATCGATCTTCCTCGCCCTGAGCCTGTT CAGTGCCGGCTGCCTGTTGGCGGTCAGCCTGGGCCTGCCGGAAAGCCTGCCCGAGCACATACCGCGGCAACCGCTGTCTGGCGCCATGCGCCAATACTTG CGCCTGTTCGCTGACCGGGTGTTCGTCGGCCATGCCCTGACCGGTGGTATCGCCATTGCCGGCATGTTTGCCTACATCGCCGGTTCGCCTTTCGTGTTCA TCAAGCTCTATGGCGTGCCGGCCGAGCATTACGGCTGGTTGTTCGGCACCAATGCCGCCGGCTTCATCCTGGTGGCGCAGGTGAATGCACGCTTGCTGGC CAAGCGCGGGCCGGCATTTCTGTTGGCGCGTGCGGTGTGGCTGTACCTGGCTGCGGGCCTGGTGTTGCTGGCCGTGGCGGCAACGCGGCCAACACAGCTG TGGCCACTGCTGGTACCGCTGTTCGTCTGCATCTCCAGCCTCGGCTGCATCATCCCCAACGCCTCTGCCTGTGCCATGAGCGGGCAGGGGACGCGGGCCG GCAGTGCCTCGGCGCTGATGGGCTGCCTGCAGTTCAGCGTCGCCGCCGGCGCAGCAGCGCTGGTCGGGCTGCTGCATGATGGCAGTGCGGTACCGATGGC GCTGGTGATCAGCCTGTGCGGGGCGCTGGTGGTCAGTGTCGCGCTGCTGACCCGACGCTTGCCGGCCAAGGCTCCCGCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGTGAGGTGCCTGCAGACGGGTTTCCAGCGTGGCGACGAAGGCACGCGCCTCGGCCTCGCTGCGGAAACTGACCACGTGTTGATCGAGCTGGACCTG CCAGGGGCAAGCGGGGTTTCGGCTCGATGCACTGACGACAATTTTCATCGCGGCATACCTCCAAAGGGGGAGAGCGGATGAAGTGTAGCGCTGCACCTTC TGCCCGCCATGACCTGCATCAGTGTCCTGACTGACGGTCGGCAAGAACGTTTTCTACATGTTTTTTCCAGCTTGGGGTGCAATGCCCGCAAGCACGTGGA ACCTTCGCTTTGGGTTGCGCTACTTGTGGAAACTGGTTGTCGGCCGCGTCCGAAGTTGCATCCGGTGTTTTTTCCGCCTGTCGTTTCCGGGCTCCTGCCA TGTGTGCCGGGCTGCTTGTCCACGCGGTCCGGGCAGCTTTCACGCACTGTTCCGCTGCCTGCCATGGGTAGGCATACCCAGTGGTATTTTGCCTGTGGCA
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| Amino Acid Sequence |
>Bcr/CflA family drug resistance efflux transporter
MNLRMVLILGALSAFGPLAIDFYLPAFPAMAQAFATDEKHVQATLAAYFLGLSFGQLAYGPVADRFGRRKPLMFGVTLFTLASLACAYAPDLDTLVLARF VQALGGCAGMVLSRAIVSDKCDPVASAKVFSQLMLVMGLAPILAPMLGGVLVNVAGWQSIFLALSLFSAGCLLAVSLGLPESLPEHIPRQPLSGAMRQYL RLFADRVFVGHALTGGIAIAGMFAYIAGSPFVFIKLYGVPAEHYGWLFGTNAAGFILVAQVNARLLAKRGPAFLLARAVWLYLAAGLVLLAVAATRPTQL WPLLVPLFVCISSLGCIIPNASACAMSGQGTRAGSASALMGCLQFSVAAGAAALVGLLHDGSAVPMALVISLCGALVVSVALLTRRLPAKAPA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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