Pseudomonas sp. C5pp, RR51_RS19050

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig24, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CACGCTGACAACCTTGGCCGCCGGCTTGACCTCGGCCACGGTAACAGCCGGCTCAACTGCCGCCTTGGCGGTCTTGCGCAGTTCGGCCAGCGATGGGCTC TTGCTCTTGGCGACAGCTGCCGCCTCGGGTTTGCTCAGCGAACGCTGGCAAGACTTGCAGGATACGTCCTCGGTCACGGCAGTGCTGACAAGGGTCTGAC TGCTGCGCCCGCAGGCGGAATCGAGGCCATTGGAGGAAAAGTGAGTAACCAAAACCGAACATCTCCGATGCGTTGTCATTTGAAGCGGGCGCTATTCTCG CACAGGTTGCAGGGGCTTGCCGAACCACCGGGCAGGCACCACCGGTCACATCGGCTGGCACTTTGCCATAATCCTAGGCATGCTAGCCCGTTTCGGGTGT CCGGCCTTATAGTGCGCCACCGCGGTCTGGCAACCAGACACCGGCACACACCGTGCATGATCCATCCCTGCCATCGCCAGCCCAATCGCAGGATCAACGC
DNA Sequence for Gene
>RR51_RS19050
TTGACCAATCTTACTCATCCGTCGACATTGCGTTCCGCGCCACAGGCGCCCGTGGCCTCGCTGCGCGGGTCGATCAAGGGTGCGCTGGCGCTGCTGGCCC TGATCCTGCTGGGCCTGCTGCTGTGGCAGCTGTTCGCCCAGTTCAACCATACCCAGGCCGACCTGCGCAAACAGAGCCTGGACGCCACCGCCGAACTGGC CGACCACCTGAGCCTGAACATGGCCCTCAAGGCGCAACAGGCCGTGAATGTGGTGCAGCCCTACGTCAAGGCGCCGACGCCCTCGGCCCTGCCCAGCCTG CTGGGCACCCTTCGCGAGCGCCTGCCGGCCCTGCAGAGCATGGCCTGGCTGGACGCTACCGGGCAGGTGCAGGCCGACAGCCTGGCCGGCAGCCCCGACC GCCATTTGCTTGACGAGCTGCTGAGGCTGAACCAGGGCAGCCCGTACTTCTTCACCAATTCGGGCGACAACCGCACCGTCTACCTATTGCTACGCCAGGC CACCGAACAAGACCGCGGCTACTGGCTGCTGCGCCTGTCGCCGGACTACTACCGCACCCTCACCCTCCACCTGGATGGTGCGGGCCACCCGCTGTGGCTG TTGGAAAACAGCCGCAACGGCGAGGTACTGCAAAGCCATGCGCCGGCCGTTACCAGCAACGAACCGCTGCAAAGCGTGATGCTGGCTTTCATCGACAACA GTACCTGGCAGTTGCGCGGCCTGTTCGACGCCAAGCTGGCCCAACAGAAGCTGCTGCCGGCGCTGCTCGGCAAATGCCTGCTGGTGCTGTTCTGCGCCCT GCTGCCGATGCTGGCCCTGGTCAACATGCGCCGCCGCCAACGGGCGCTGCAGGACGACCGCCGGCGCTATCAGGAAATCTTCGAAGGCACCGGCGTGGCC TTGTGTGTGCTCGACCTGTCCAGCCTGCCCGGCCAACTCGACCGTTACCACCTGCGCAACCGTGCCGCGCTCAAACACAGCCTGGCCCTGGACCCCAACC TGCGCCGCTCGCTGCTGCTGGAGCTGAAGATCACCGAGATCAACCAGGTGGCCCGCCAACTGTTGAACATCGACAGCCACGAAGGTGCCTGGCAGCGCCT GATCGATGGCACTGGCGATGGCCGCGACAGCATCGGCATGCAACTGATCGACGCGCTGATCGAGCAGCGCCCGCTGCTGGAGCTGGAGGTGCGCCTGCCG GCGCCGCTGGGTGGCGAGCTGCACCTGTGGCTGATGGCCCGCCTGCCGCAGCAGCGCCGCGACTACCAGGCGGTCATCCTCAGCATCAGCGACATCACCA GCCGCAAGCAGGTGGAGCTGTCGCTGCTGGAGCGCGAGAGCTTCTGGTCGGACGTGGTGCGCACCGTGCCCGACCAGTTGTATGTGCAGGACGTGCTCAG CCAGCGCATGATCTTCAGCAACCGCCACCTCGGCCAGACCCTGGGCTACGACCGTACCGAGCTGGCGCATATGGGCGAGCGCTTCTGGGAGCTGCTGCTG CACCCCGAGGATGCCACGCACTACCAGGCGCTGCGCCAGCAACAGCGCGACAGCGGCCATGACCAGCCGCTGCACTGCCAGTTGCGTTTCCGCCACCGCG ATGGCGGCTGGCGCTGCTACGACATCCGCGAACAAGTGCTGACCCGTGACGCCGACGGCCTGGTGACACGCATCATCGGTGTGGGTAAGGACGTGACGGT GCAGATCGAGGCCAGCCAGTCGCTGCGCGACAGCGAGCAGCGCTACCGCATGCTCGCCGAAAGCATCAGCGACGTGATCTTCTCCACCGACAACCTGCTC CAGCTCAACTACGTAAGCCCCTCGGTGCAAAGCGTGCTGGGCTACCAGGCCGACTGGATCTTCGCCAACGGCTGGCAGTCGATCATCGCCAACCCGTCCC AGCTCACCGGCATCTACAGCCTGATGGAGCGCGTCAGCAAGGCCATGGGCGACGCGGCCCAGCTGGCCCAGCTACGCAACCAACTGCCCACCCAGCTGTT CCTTTTCGACTGCCTGCGCGCCGATGGCCGCAAGATCCCCATCGAACTGCGCCTGGTGCTGGTGTGGGACGATGAAGAGCGCTTCGAAGGCGTGCTCGGT GTTGGCCGCGACATCAGCCAGCAACGCCGTGCCGAGAAAGACCTGCGCATGGCCGCGACGGTATTCGAGCACTCCACTTCGGCCATCCTCATCACCGACC CGGCGGGCTATATCGTCCAGGCCAACGAAGCGTTCAGCCGCGTCAGTGGCTACGCCGTCAGCGAGGTGCTCGACCAGTTGCCGGGCATGCTTACCGTCGA CGAGCAGCAGGAAGGCCACCTGCGCTACGTGGTGAAGCAGCTTTACCAGCGCGGCAGCTGGGAGGGCGAAATGTGGCTCAAGCGCCGCGACGGCGACCAC TACCCGGCCTGGGTCGGCATTACCGCAGTGCTGGACGACGAAGGCGACCTTGCCAGCTACGTGTGTTTCTTCACCGACATCAGCGAGCGCAAGGCCAGCG AACAGCGCATCCACCGCCTGGCCTACTACGACGCCCTCACCCACCTGCCCAACCGCACGTTGTTCCAGGACCGTCTGTACAACGCCCTGCAGCAGGCCGA GCGGCAAAAGGCCTGGGTGGTGCTGATGTTCCTCGACCTGGACCGCTTCAAACCGATCAACGACTCCCTCGGCCACGCTGCCGGCGACCGCATGCTCAAG GACATGGCCCAGCGCCTGCTGGCCTGTGTGGACAACGACGACACCGTGGCGCGCATGGGCGGCGACGAGTTCACCCTGCTGCTGCAACCGCGCGCTACCC GCGAGATGGCACTCAACCGCGCCATCCACGTGGCCGAGAACATCCTCGGCAGCCTGGTGCGGCCGTTCGTGCTGGAAAACCGCGAGTTCTTCGTTACCGC CAGTATCGGCATCGCCCTCAGCCCGCAGGACGGCAGCGAGCTGAGCCAGCTGATGAAAAACGCCGACACCGCCATGTACCACGCCAAGGAGCGCGGCAAG AACAACTTCCAGTTCTACCAGGCGGAGATGAACGCCAGCGCCCTGGAACGCCTGGAGCTGGAGAGCGACCTGCGCCATGCCATGGAGCAGAACGAGTTCA TCCTCTACTACCAGCCGCAGTTCAGTGGCGACGGCAAGCGCCTGACCGGCGCCGAAGCCCTGCTGCGCTGGCGCCACCCGACCCGCGGCCTGGTCCCGCC GGGCGACTTCATCCCGGTGATCGAAGAACTGGGCCTGGTGGTGGACGTGGGCGACTGGGTGCTGCGCGAGGCCAGCCGCCAGCTCAAGGCCTGGCACAAG GCCAAGGTGCGCGTGCCCAAGGTGTCGGTGAACATCTCGGCGCGGCAGTTCTCCGACGGCCAGCTGGGCACGCGCATCGCCACCATTCTGGAAGAAACCG GCCTGCCACCGGCGTGCCTGGAGCTGGAGCTGACCGAAAGCATCCTGATGCGCGAAGTGAACGAAGCCATGCAGATTCTCGCCAGCCTGAAAAACCTCGG CCTGAGCATCGCGGTGGACGACTTCGGCACCGGTTATTCGTCGCTGAACTACCTCAAGCAGTTCCCGATCGACGTGTTGAAGATCGACCGCACCTTCGTC GACGGCCTGCCCGAAGGCGAACAGGATGCGCAGATTGCCCGGGCGATCATCGCCATGGCCCACAGCCTCAACCTGGCGGTGATCGCCGAAGGGGTGGAGA CCCACGAGCAGCTGGAGTTCCTGCGCGAGCATGGTTGCGACGAGGTGCAGGGCTACCTGTTCGGACGGCCGATGCCGGCGCATCAGTTCGAGGCGCAGTT CGCCAACGAGAAGCTCTTCATGTTCCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCGACGCCTCCTGGCGTGCGCGTACTCTGTAGGAGCGGCCTTGTGTCGCGAAAGGACCGCAACGCGGTCCCGACAATTTCGGCGGCAACGCTGCAATC GCGGGGCCGCTGCGCGCCCCTTTCGCGACACAAGGCCGCTCCTACAGGGACCGCGCCCGGCCTGAGAAGCGCACCTGTAAAAACGGACCTGCGAGTCAAC TCCAGTTCCCACCCAGCCCAGAAACGGCGCGGGATGCAACGTGAAGCCCATTGGTCCGCGACTTGATGCCACTTCATATGCCAGCCGCGGATCAATCGGT TAGAATGCCCCCCCAATTCACCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACCATTGCCAAGTACGACGCCGAGCTCTTCGAAGCCATGCA GCAAGAAGCTCTGCGCCAGGAAGAGCATATCGAGCTGATCGCTTCGGAAAACTACACCAGCCCGGCAGTCATGGAGGCCCAGGGCTCGGTCCTGACCAAC
Amino Acid Sequence
>diguanylate phosphodiesterase
MTNLTHPSTLRSAPQAPVASLRGSIKGALALLALILLGLLLWQLFAQFNHTQADLRKQSLDATAELADHLSLNMALKAQQAVNVVQPYVKAPTPSALPSL LGTLRERLPALQSMAWLDATGQVQADSLAGSPDRHLLDELLRLNQGSPYFFTNSGDNRTVYLLLRQATEQDRGYWLLRLSPDYYRTLTLHLDGAGHPLWL LENSRNGEVLQSHAPAVTSNEPLQSVMLAFIDNSTWQLRGLFDAKLAQQKLLPALLGKCLLVLFCALLPMLALVNMRRRQRALQDDRRRYQEIFEGTGVA LCVLDLSSLPGQLDRYHLRNRAALKHSLALDPNLRRSLLLELKITEINQVARQLLNIDSHEGAWQRLIDGTGDGRDSIGMQLIDALIEQRPLLELEVRLP APLGGELHLWLMARLPQQRRDYQAVILSISDITSRKQVELSLLERESFWSDVVRTVPDQLYVQDVLSQRMIFSNRHLGQTLGYDRTELAHMGERFWELLL HPEDATHYQALRQQQRDSGHDQPLHCQLRFRHRDGGWRCYDIREQVLTRDADGLVTRIIGVGKDVTVQIEASQSLRDSEQRYRMLAESISDVIFSTDNLL QLNYVSPSVQSVLGYQADWIFANGWQSIIANPSQLTGIYSLMERVSKAMGDAAQLAQLRNQLPTQLFLFDCLRADGRKIPIELRLVLVWDDEERFEGVLG VGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGMLTVDEQQEGHLRYVVKQLYQRGSWEGEMWLKRRDGDH YPAWVGITAVLDDEGDLASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLK DMAQRLLACVDNDDTVARMGGDEFTLLLQPRATREMALNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGK NNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHK AKVRVPKVSVNISARQFSDGQLGTRIATILEETGLPPACLELELTESILMREVNEAMQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFV DGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQFEAQFANEKLFMFH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site