Pseudomonas sp. C5pp, RR51_RS18400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAGGTCTTCTCGGCAGACCCATACCTTAACCGATGGTGGTTTATCCGGCACAGAATCCTCTACGCCACCTGTTGCCCACTTCGACCACTGGACGATTG CAATCGTTCGGATCTTCTGGCACTCACAAGATAGTAGGCGCCGCAGGCAGGATTGCTCAAGGTGGTGGCGGTTAAAAATGGCGAAAATGCAGCCAAATGC CATTCTTGACCGCACGCCCTGCAGCAACCGGATGTACTAGGGCTTAAGACGCTGGCAGACAGTTAGAGTCACCCTTAGTTCAACAAAAAAGTTCCTGTAC TACAGTCGCTTGCGAGCCCTGCACGTTTTTTTCACGGAGCGTGCCGCAAATCTTGTCGAAAAGGCGTCAAGCAACATTTTTTTTGCAGTTCTTGCGCTTA GTCAGTTTACTTACTACAAGTAATGGGTACTATGTACGCCGGCCAGTTTCTCTTTTCCGAGAGATGGCTATTTAATAGAAAGTCCTTGAAGGGGAACACG
|
|
| DNA Sequence for Gene |
>RR51_RS18400
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGTATCCAAAGAAACCGAAGCTCGTCTGACTGCGA CTGAAGACGCAGCAGCTCGCGCTCAAGCTCGTGCTGACGAAGCCTACCGTAAGGCTGACGACGCACTGGCAGCCGCTCAGAAGGCTCAGCAGACCGCTGA CGAAGCCAACGAGCGCGCTCTGCGTATGCTGGACAAAGCCAGCCGCAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TAATCCTCACGGATTGTTATGAAGCCGACCCACTTGTGGGTCGGCTTTTTTATTGCCTACGCACAAGGCAAACGCGCCAGGCAGAAACGAAAAGGCCTGC ACTAAGGCAGGCCCGGGTGTGTCGCAATTACCTTACTGCAGTTCGGGCGGAATGCTCGAAACCATCGGCGCACCACCCTGGTTTTCGGTCGGTACGGCAA TTTCCACCGGCATGCCATCTTCCGCGGCCACCACATCACGCACCATGTCCCAGTTCATGCGTAGGTTATTGGCCAGGTCTTCTCGCTTGAGCAAGGCATT GATAACAGCAGTGTGTTTATCGACCACCGACGGATTACCCTGGTCGTCCAGCGGCGTGTGCGCCTCCAGATAGACCTTGCCACCACTGATACCGAACTTG TAGGGCTCGTTGATGATGCGCACCGGCGTACCCACCGGCACCATCTTCGACAGTTCCAGCACGTTGTTGTTGAGCATGCGGAAGCAACCGTGGCTGGTAC
|
|
| Amino Acid Sequence |
>hypothetical protein
MNNVLKFSALALAAVLATGCSSVSKETEARLTATEDAAARAQARADEAYRKADDALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|