Pseudomonas sp. C5pp, RR51_RS17025

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig20, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AGGTCGCGCTGGATGCTGGCGAGGTGTGCTTGCGCCTGGTCGATCAGGCTTGCCGGGCATCGGTGCTCAAGGGCACGGCCAACCTGCAGCCGCGGCAAGG CCCGGCGCTGCTGCTGCAGGCCGGGCAGCAGGCCAGCCTGCAAGTGGCCGGGGTTGGCCCTGTCACCGGCCTGGACGCATGGCTGCTGGGCTGGCGCGAA GGGGTACTGCGGCTGGAGGACCGCCCGTTGGGCGAGCTGCTGCACGAGCTGCGCAGGTACCGACCCGGCGTGCTGCGCTGGGCGCCCGAACTGGAGGCCC TGCGCGTGACCGGTACGTTCCGCCTCGACGACACCGACCAGGTGCTGGCCTTGCTCGCCGCCAGCCTGCCGTTGCAGGTTCACACGCGCACGCGTTACTG GGTGAGCCTGGCCGCGCGGGAAAATCGCGCATGAGGCTGTCCCCTTTTTTTCGCTCACCGGTCATTACCGGTAGGAGCAAATAAAGGGGAGCCTTGTTCA
DNA Sequence for Gene
>RR51_RS17025
ATGCCTGTTGTCATGTCCAGCCGCCTGCGCCCACTGGCGCGTGCGGCACATCCGTTGTTCGCCATGAGCCTGTTGTTGTGTGCACCGGCCTGGGCCGATG AACCTGCCCGGCGCAGCTATCAGGTGCCAGCCGCCAGCCTGGGTGCGGCACTTACCCAGTTTGCCGACCAGGCCGGGGTCAGCCTGTCGCTGGACCCGGC GCTGGTCAACGGCCGGCAGAGCAATGGCCTGTCCGGCAGCTACAGCGTCGACGAAGGCTTCACCCAGCTGCTGCGCGGCAGCGGCCTGCAGTTGCTGCCG GTGGGCGAGGGCGCTTTCACATTGATGCCGGCACCCCAGGCGGGTGGTGCGCTGGAAATCGCCCCGACCAGCATCGTCGGTGGCCTGGCCGCAGGCAACG AAACGCAACCCTATGCCGGTGGCCAAGTGGCCCGTCAGGGTTCACAGGGCCTGCTCGGCACGCGCGACTTCATGGAAACCCCGTTCAGCATCACCAGCTA CACCAGCGAACTGGTGAAGAACCAGCAGGCGCGAACCTTGGGCGAGCTGATCGCCAGCGACCCATCGGTACGCGCCACCAACCCGGCGGGTGGGCGCTTC GAGCAGTTCACCATTCGCGGCTTCAGCCTGTTCAACAGTGATGTGGCCTACAACGGCCTGTACGGCATCCTGCCGACCTACTCGATCGACATGGAAATGG CCGACCGGGTCGACATCATCAAAGGCCCCAGCCAGCTGATCAACGGCATTTCGCCGCGAGGCAGTGTCGGCGGCGGCATCAATGTGCAGCCCAAGCGGGC CGGCGACCAGCCGCTCACCGAGTTTACCGGCAGCTACGCCTCGGCGGGTCAGGCAGGCGGTGCGGTGGACGTTGGCCGGCGCTTTGGCGAAGGCCAGCAG TTCGGCGTGCGCTTCAATGGCGTGAAACAGGCGGGCGATACCGAATGGGAGCACCAGCGTGTCGAACGTGAAATGGCGGTGTTGGGCCTGGACTTTCGAG GCGAGCGCCTGCGGCTTTCGGCGGACCTTGGCCATACCGAGCGCGATACCGATGCACCGCAGGAGCGGGTGCTGGTCGGTGCCAATGCCAAGGTGCCGGA TGCCAACGACGTACGCCACAACTACGCCCAGGCCTGGAGCAAGGCGCGCACCAACGACACCTTCGGTGCGCTGCATGCCGAGTACGATATCAGCGAGTCG CTGCTGGCCTATGGCGCGGTCGGCGCGCGCAAGAGCAACCATGACTTCCTGCGCCACAACGTGTCCATCAGCAACGATGCCGGCGACTTCACCGTGCAGC CGCGCGACTTCACCCGGGATGAAAGCGTGCGTACCGCCATGGCCGGCGTGCGCAACTGGTTCCATACCGGGCCGGTCAGCCACGAACTGAACCTGGCCGC CACCTACTTCTACATGGACTTCACCAACGGCGGCGCCCGCTATGCCTCGGCGCCCAGTAACCTCTACCACCCGGTGGCCACGCCGACACCGGGCACGCCA ACCCGCATCGACCCTGAGGTGTACACGGAAAACCGCTTTTCCGGCGTGGCCCTGGCCGACACCCTGGGCTTCTTCGATGACCGCCTGCTGCTGACCCTGG GCGCGCGTTGGCAGCGGGTGCAGGTGGATGACTGGAGCGACGGCATCAAGGGGGATACCGCCTACGATGAAGAGAAGGTGTCGCCCTCGGGCGGCGTGCT GCTCAAGGTTACCGACCAGCTGTCGTTGTATGCCAACTACATGGAGGGCCTGAGCCAAGGCAAGATTGCGCCGTCGACATCGGTCAACGAAGACCAGATC TTCCCGCCGTTCACCAGCCGCCAGGTCGAGGTGGGGGCCAAGTACGACCTGGGCCAGGTCGCCTTTACCGCCAGTGCCTTCCGCATCCGCCAGCCCGCCT ACGAAACCAACCCCACGTCGCGGGTGTTCGGACCCAATGGCAAGCGCGACAACCGCGGTATCGAACTGAGCGTGTTCGGCGAGCCCGTGCAAGGCGTGCG TGTGCTGGGCGGGGTGATGTACATCGACAGCGAACTGACCGACACCATCGGTGGCGCCTACGATGGCAACCGCGCGCCGGCCACGCCCGAGTACAACGTC AACCTTGGTGCCGAATGGGACGTGCCTGGGGTGAACGGCCTGACCCTGACGGCGCGGGGCATCCACTCGAGCTCGCAGTACCTGGACCAGAACAACAGCA AGCAGATCGACGGTTGGGAGCGTTACGACCTGGGGGCGCGTTATGCGTTCAAGGTGGATGCCACCCAGGTTACCTTGCGCGCCAGTGTCGAGAACGTGCT GGACGACCGCTACTGGAGCTCGGCCGGAGCTTCGGATGACAGCGAGCCGGGGCTGACGCTGTCTACGCCGCGTACCTACCTGCTGTCGGCGACAGTGGGT TTCTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCATTTCAAAAGTGGGCGCGTTCCCTGTAGGAGCGGCCTTGTGTCGCGAAAGGGCTGCAAAGCAGCCCCAGCAATTTCAAGTGTTGCGCATCAATCCTG GGGCCGCGTTGCGGCCCTTTCGCGACACAAGGCCGCTCCTACAGGTTGAACCGATCGATCAGACCGAATCTGGCACCACGGCGATCACATCGATCTCCAT CAGCCACTCGGCCTGGGCCAACCCGGCCACCACCAGCCCGGTGGAAATCGGGAACACGCCCTTGAGCCACTTGCCTACCTCCTTGTACACCGGCTCGCGG AAGCGCGGGTCGGTGATGTAGGTGGTGGTCTTGACGATGTGCGACAGGTCCGAGCCGGCTTCTTCGAGCAGTTGCTTGACGTTCTTCATTGCCTGCTCGG TCTGCGCCCGTGGGTCACCCAGGCCCACCAGGTTGCCTTCGAAGTCGGTGCCGACCTGGCCGCGCACGTAGATAGTGTTGCCGGCGCGCACCGCCTGGCA
Amino Acid Sequence
>TonB-dependent receptor
MPVVMSSRLRPLARAAHPLFAMSLLLCAPAWADEPARRSYQVPAASLGAALTQFADQAGVSLSLDPALVNGRQSNGLSGSYSVDEGFTQLLRGSGLQLLP VGEGAFTLMPAPQAGGALEIAPTSIVGGLAAGNETQPYAGGQVARQGSQGLLGTRDFMETPFSITSYTSELVKNQQARTLGELIASDPSVRATNPAGGRF EQFTIRGFSLFNSDVAYNGLYGILPTYSIDMEMADRVDIIKGPSQLINGISPRGSVGGGINVQPKRAGDQPLTEFTGSYASAGQAGGAVDVGRRFGEGQQ FGVRFNGVKQAGDTEWEHQRVEREMAVLGLDFRGERLRLSADLGHTERDTDAPQERVLVGANAKVPDANDVRHNYAQAWSKARTNDTFGALHAEYDISES LLAYGAVGARKSNHDFLRHNVSISNDAGDFTVQPRDFTRDESVRTAMAGVRNWFHTGPVSHELNLAATYFYMDFTNGGARYASAPSNLYHPVATPTPGTP TRIDPEVYTENRFSGVALADTLGFFDDRLLLTLGARWQRVQVDDWSDGIKGDTAYDEEKVSPSGGVLLKVTDQLSLYANYMEGLSQGKIAPSTSVNEDQI FPPFTSRQVEVGAKYDLGQVAFTASAFRIRQPAYETNPTSRVFGPNGKRDNRGIELSVFGEPVQGVRVLGGVMYIDSELTDTIGGAYDGNRAPATPEYNV NLGAEWDVPGVNGLTLTARGIHSSSQYLDQNNSKQIDGWERYDLGARYAFKVDATQVTLRASVENVLDDRYWSSAGASDDSEPGLTLSTPRTYLLSATVG F
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site