Pseudomonas sp. C5pp, RR51_RS16990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGTTGGGCATCCTCTACGAAAGCTACATTCACCCGCTGACCATTCTCTCGACACTGCCCTCGGCCGGCGTCGGTGCCTTGCTGGCGCTGTACGTCA CCGGCGGCGAGTTCAGCCTGATCTCGCTGCTGGGGCTGTTCCTGCTGATCGGCGTGGTGAAGAAGAACGCCATCCTGATGATCGACCTGGCCTTGCAGCT GGAGCGCCACCAAGGCCTGACACCGGAAGAGTCGATCCGCCGGGCTTGCCTGCTGCGCCTGCGGCCGATCCTGATGACTACCCTGGCGGCCATCCTCGGT GCCTTGCCGCTGCTGCTGAGCCGCGCCGAAGGTGCGGAAATGCGCCAGCCTCTGGGCCTGACCATCATTGGCGGCCTGGTGTTCAGCCAGGTCCTCACTC TTTACACGACACCGGTGGTCTACCTGTACCTGGACCGCCTGCGTCACCGTTTCAACCGTTGGCGTGGCGTGCGCACCGACGCCGCCCTGGAAACCCCGCT
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| DNA Sequence for Gene |
>RR51_RS16990
ATGACTTTTGCCCAGACCCCACTTCACCGCGCCCTGCAGACGCTGACCCGTGGGCGTGGCTCGCGCCTGCTCGGCGCCGGGTTGTGCGTCGCCTTGCTCA GCGCCTGCACCCTGAGCCCGGACTACCACCGCCCGGAGCTGAGCAGCACGGCGCAGTTCAAGCACGCCGAAGGCTGGACCCAGGCCACGCCGTCCGATGC CATCGCCCGCGGCGCCTGGTGGGAAATCTACGGCGATGCCGGGCTCAATGCACTGGTCGAAGAGCTCAACCGCAGCAACCAGACCGTGGCCCAATCGGAG GCCCAGTATCGCCAGGCCCAGGCGCTGGTGCGCAGCAGCCGGGCGGCGCTGTTCCCCAGCCTGGACCTGAGCGTCGGCAAGACCCGCTCGGCCCAGGGTA CCGGCAGCTCCAGCTCGAGCCTGTCCAACAACAGCAGTGGCATTCGCAACACCTACAATGCCCAGCTCGGCGTCAGCTGGGAAATCGACCTGTGGGGCAA GCTGCGCGAGACCCTGAACGCCAACGAAGCCAGTGCCGAAGCCAGTCTGGCCGACCTGGCCTCGATCCGCCTCAGCCAGCAGTCGGAACTGGTGCAGAAC TACCTGCAGTTGCGGGTGATCGACGAGCAGAAACGCCTGTTGGAAGCCACCGTGGCAGCGTATGAACGTTCCCTGCGGATGAACGAAAACCAGTATCGCG CTGGCGTCGCCGGCCCTGATGCAGTGGCCCAGGCGCGTACCCAGCTCAAGAGCACCCAGGCCGACCTGATCGACCTGGTCTGGCAGCGCGCGCAGTTCGA GAACGCCATTGCCGTGTTGCTGGGCAAGACCCCGGCGGACTTCGCCCTGGCCGACAGCAAATCCATTCCGGCGCTGCCGCAAATTCCGGTGGCCTTGCCT TCGCAGTTGCTGGAGCGACGCCCGGACATCGCTGCGGCCGAGCGCAACGTGATGGCTGCCAACGCCAACATCGGCGTGTCGCGGGCGGCGTATTTCCCGG ACCTGAGCCTGAGCATGAGTGGCGGTTACTCCAGCAGCAGCTTCAGCAACTGGATCGAACTGCCCAACCGCTACTGGTCGGTGGGCCCGCAGCTGGCGCT GACCTTGTTCGACGCCGGCAAGCGCAGTGCCGAGGTGGACCGCACGGTAGCGGTGTACGACCAGACCGTGGCGCAGTACCGCCAGACCGTGCTCGACGGC TTCAAGGAAGTGGAAAACCTGCTGGTGCAGTTGAAGGTGTATGGCGATGAGGCGGTGGTGCGCCAGGAGGCACTGGATGCTGCCCGCGAGTCGCTGCGTC TGACCGAGAACCAGTACCGCGCCGGGCTGATCGGCTATCTGGATGTGGTCAACGTGCAGACCACGGCGCTGAGCAACGAGCGCAGTGTGTTGAACCTGCT GCAAGGGCGCCTGGTGGCAAGCGTGCAGCTGGTTGCCGCGCTGGGTGGTGGTTGGGATGCGGAACAGGCGTTTGCCGAGCAGGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATATTGGCAGTGCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCAGGTTCTCGGCACAATGGCTGATATTGCTGGGGCTGCTTC GCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAGAGAGTGCATTTCTGCGAGGCCGTATAGCGTCTTCCCTTTGGATCCATTCCCATTCGCAAAAAC CCCGTGCGTTTCGCCTGACCTTGAGTACAATCGTCAGCTTTTTCCGGGCCTCCCGCCCCGCTGGAACTCTCGATGCTGACCGGTAGCTACTCCTCTTCGC TGGTGTTGATTTCGCTGTGCGTGGCGATTCTGGCGTCCTATACCGCCCTTGACCTGACCGGCCGCATCGCCACGGCCAAAGGCCGGGCTGCCTGCCTGTG GATGGGGGGTGGCGCGTTGGCCATGGGCATCGGCGTGTGGTCGATGCACTTCATCGGCATGCTCGCCTTCAGCCTGCCCATCGACCTGGGCTACGACCTT
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| Amino Acid Sequence |
>RND transporter
MTFAQTPLHRALQTLTRGRGSRLLGAGLCVALLSACTLSPDYHRPELSSTAQFKHAEGWTQATPSDAIARGAWWEIYGDAGLNALVEELNRSNQTVAQSE AQYRQAQALVRSSRAALFPSLDLSVGKTRSAQGTGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASLADLASIRLSQQSELVQN YLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQARTQLKSTQADLIDLVWQRAQFENAIAVLLGKTPADFALADSKSIPALPQIPVALP SQLLERRPDIAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQLALTLFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDG FKEVENLLVQLKVYGDEAVVRQEALDAARESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGWDAEQAFAEQD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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