Pseudomonas sp. C5pp, RR51_RS16935

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig19, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGAGCAGTCGCCGCTGTGCTGGTTCGCGGGCTACCACGGCCTTCCGACCAAAGCCTTCGTCGGCAAGTACTACCTCAGTGGCGACACCGTCGAACTGAA CCAGGACGGCAGCATCAGCTTCGTCGGCCGCAGCGACGATGTGATCACCACCTCCGGCTACCGGGTCGGCCCGTTCGACGTCGAGAGTGCACTGATCGAG CACCCAGCGGTGATCGAAGCGGCGGTGATCGGCAAACCGGACCCGGAGCGCACCGAACTGATCAAGGCCTTCGTGGTATTGGCCAGCGGTTACCAGGGCA GCGCCGAGCTTGAAGAGGCTTTGCGCCAGCACGTGCGCCAGCGCCTGTACGCCCATGCCTACCCAAGGGAAATCGAATTCGTCAGCGAGCTGCCCAAGAC CCCGAGCGGCAAGCTGCAACGCTTCATCCTGCGCAACCAGGAAGTCGCCAAACAACAAGCGCAACAGGCCACCCCTGCCAGCGCCTGAAAGGAACCGATC
DNA Sequence for Gene
>RR51_RS16935
ATGCAGATAGCCAACAAACACTTCATCGTCAGCGGCGCCGCCTCCGGGCTGGGCGCTGCCACCGCGCAGATGCTGGTCGAGGCCGGCGCCAAGGTCATGC TGGTCGACCTCAATGCCCAGGCCGTTGAAGCCAAGGCCCGCGAACTCGGCGAAAACGCCCGTTTCGCGGTGGCCGACATCAGCGACGAGCAGGCCGCCCA GGCGGCGGTCGATGCGGCCGTCAGCGCCTTTGGCAGCCTGCACGGGCTGGTCAACTGCGCCGGCATCGTCGGTGCCGAGAAAGTGCTGGGCAAACAGGGC CCGCATGGCCTTGCCAGCTTTGCCAAGGTCATCAACGTCAACCTGATCGGCAGCTTCAACCTGCTGCGCCTGGCCGCCGCGGCCATGGCCGAAGGGGCTG CCGATGAGGGGGGGGAGCGCGGGGTGATCATCAACACCGCCTCCATCGCCGCCTATGACGGCCAGATCGGCCAGGCGGCCTACGCTGCTTCCAAGGGCGC CATCGCCAGCCTGACCCTGCCGACCGCCCGCGAACTGGCGCGCTTCGGCATCCGTGTGATGACCATTGCCCCGGGCATCTTCGAAACGCCGATGATGGCC GGCATGACCGAGGAAGTACGCGCCTCGCTGGCCGCCGGCGTGCCTTTCCCACCGCGCCTGGGGCGCCCGCAGGAATATGCCGCGCTGGCCCGCCACATCA TCGAGAACAGCATGCTCAACGGCGAGGTTATCCGCCTCGACGGCGCACTGCGCATGGCTGCCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGAGAGCGAACATGACCCTCGCCAATGACCCGATCGTTATCGTCAGCGCCGTGCGCACGCCCATGGGCGGCCTGCAGGGCGACCTCAAGAGCCTGACCGC GCCGCAGCTGGGCAGCGCCGCCATCCGTGGTGCCGTGGAGCGTGCTGGCATCGATGCTGCCAGTGTCGAGCAGGTGCTGTTCGGCTGCGTGCTGCCGGCA GGCCAAGGCCAGGCACCGGCGCGCCAGGCCGCGCTGGGCGCCGGGCTGGACAAGCACACCACCTGCACCACCCTGAACAAGATGTGCGGTTCGGGCATGC AGGCGGCGATCATGGCCCATGACCTGCTGCTGGCCGGTACCGCCGATGTGGTGGTGGCCGGTGGCATGGAAAGCATGACCAACGCCCCGTACCTGCTGGA CAAGGCCCGTGGCGGCTACCGCATGGGCCACGGCAGAATCATCGACCACATGTTCATGGACGGCCTGGAAGACGCCTACGACAAGGGCCGCCTGATGGGC
Amino Acid Sequence
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIANKHFIVSGAASGLGAATAQMLVEAGAKVMLVDLNAQAVEAKARELGENARFAVADISDEQAAQAAVDAAVSAFGSLHGLVNCAGIVGAEKVLGKQG PHGLASFAKVINVNLIGSFNLLRLAAAAMAEGAADEGGERGVIINTASIAAYDGQIGQAAYAASKGAIASLTLPTARELARFGIRVMTIAPGIFETPMMA GMTEEVRASLAAGVPFPPRLGRPQEYAALARHIIENSMLNGEVIRLDGALRMAAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site