Pseudomonas sp. C5pp, RR51_RS13860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTTATCCACTCAAGGGCTATAGCCTGACATTACCGATCGGCGCGCAGCACAAGGCGCCGGACCTGAGCATCACCGACTACGATCGCAAGATCGTCTACG CCCGGATTGGCGAACAGCTGCGGGTGGCGGCGATGGTCGACATTGTCGGTTTCGATCCGTCGCTGGACCCCAAGCGCCTGGCCCTGCTAAAACGCCAGGC CCGCGAAACCTTCGCCAATGCTGGTGACTACGACTACGCCATCGAATGGGCCGGCATGCGGCCGGCGACCCCCAGCGGCGTACCGCTGCTGGGCGCAACG GCGTATAGCAATCTGTGGCTGAACCTCGGCCATGGTGCACTGGGCTTCACCCTGGCCTGCGCCAGTGCACGATTGCTCAGTGAACTGATCGGCCAGCGCC GCCCCTCCATCGACCTGCAGGGTTTCACCGCCCGTGCGGCTGGTGGAAATAACCGTACTGCAGCACGTCGCTAACCCCTCACCTACAACGGAGAATAACA
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| DNA Sequence for Gene |
>RR51_RS13860
ATGCGAAAAATCACGTTGATCGGCTGCACCCTTGGCCTGTTGCTAGGCACCCAGGCCCATGCTGACGAAGCAGCGCTGGGGCCTACCCTGAGCAAGATTG CCAGAGCCAACAGCATTACCCTGGGCTATCGCGATGCTTCGGTGCCGTTCTCCTACGTGGGAGATCATTCGGGACAACCCATGGGCTACTCAGTAGACCT GGCGAAAAAGATCGTCGAGCGGGTACAGCAAAAGCTGGCATTGCCCCAGCTCAAGGTGAAGTACAACCTGGTGACATCGCAAACCCGCATTCCGCTGGTA CAGAACGGTACCGTTGACCTGGAGTGCGGCTCGACCGGCGTCACCGCAGAGCGCCAGAAGCAGGTGGCGTTTTCCTACGGGTTCATCTATGTCAAAGGTC AATTACTGACAGCCAAAGACAGCGGAATCAAGAGTTTCACCGACCTGCGCGGCAAGAATGTGGTAACCACTGCAGGCACCACGAACGAACGCTATTTGAA AAGCTACAACGTCGATAACAAGATGGACATGTACGTGATCAGCGCCAAGGACCATGGTGAAGCCTTCCAGATGTTGCAGTCCGGCCGGGCGGCGGCGTTC TACATGGACGATGCGCTGCTCTACGGCGAACGCGCCAAGGCTCGCGATCCGCACAACTGGGTGGTGGTCGGGGAAGAGCAGTCGCGGGAAATCTACAGCT GCATGGTGCGCAAGGATGACCCGCAGTTCCTCGCGCTGGTGAACGCGTCGCTGGGCGAGCTGTACAGCTCAGGGGAAATCAACGGGATCTACCAGCGCTG GTTCGAACAGCCGATTCCGCCTAAAGGCTTGAACCTGGAGTTCCCGATGACCAGCGAACTCAAGGCCATCTTTGCCAAGCCGGTGAGTGACCCGGTGGAG TAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATCCAGACGACCAGCCCCTCTGGCTCACGGCCTCGCTAAGTACTGGAGGCAATGGCCTCGGCCGCTCCGACCGCGCCCCGTTGCCAGCGCAGGAATGAC CTGCGATGAAGCTGACCAACCGCCCCGTTCAGCCCTCCAAATCCCTGTTCTGCTAGCGGGGAACTACATGGGGCTGAACGAGGAGGTCGACCCCCAAGGC ACGAATGACTTTCAGCACAGTGTCAAAGCGTGGTTTTGCGCCTGGACTGAGTGCCTTGTACAGACTTTCCCTTCCCAACCCACTCTCGGTGGCGATCTGC GTCATTCCCCGTGCGCGAGCGATATGGCCAAGTGCCCGAATTATTTCCTCGGTATCGCCATCTGCGAGGACCTGACTAAGGTACTCAGTGATGGCCTCAT CACTACTCAACAAGGCCGCCATATCAAACGGGATCAACTTTTCGCTCATTTCATCTCCTTCAGCAGTTTTCTGGCTTTGAGGATATCGGTGGCCTGGGTG
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| Amino Acid Sequence |
>ABC transporter
MRKITLIGCTLGLLLGTQAHADEAALGPTLSKIARANSITLGYRDASVPFSYVGDHSGQPMGYSVDLAKKIVERVQQKLALPQLKVKYNLVTSQTRIPLV QNGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTAKDSGIKSFTDLRGKNVVTTAGTTNERYLKSYNVDNKMDMYVISAKDHGEAFQMLQSGRAAAF YMDDALLYGERAKARDPHNWVVVGEEQSREIYSCMVRKDDPQFLALVNASLGELYSSGEINGIYQRWFEQPIPPKGLNLEFPMTSELKAIFAKPVSDPVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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