Pseudomonas sp. C5pp, RR51_RS13155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGTGCCTGGCAGCCCTGTACGAAAGCTGGTCGATCCCGATCGCCGTGGTACTGGTAGTACCGCTGGGTATCATCGGTGCCCTGATCGCCACCAGCATGC GTGGGTTGTCCAACGACGTGTACTTCCTGGTCGGCCTGTTGACCACCATCGGCCTGGCGGCGAAAAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACT GCACGAACAAGGCCGCAGCCTGTACGACGCGGCGATCGAGGCGTGCCGCATGCGTCTGCGCCCGATCATCATGACCTCGCTGGCGTTCATCCTCGGCGTG GTACCGTTGACTATCGCCAGCGGCGCCGGCGCCGGCAGCCAGCACGCCATCGGTACTGGCGTGATCGGCGGCATGATCAGTGCGACCGTGCTGGCTATCT TCTGGGTACCACTGTTCTTCGTCGCAGTGTCGTCACTGTTCGGCAGCAAAGAGCCGGAAAAAGACGTCACCCCTGAAACTCCACGTTATGAGGCTGGGCA
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| DNA Sequence for Gene |
>RR51_RS13155
ATGACCAAGTCTTTGTTGTCCCTGGCAGTAACCGCTTTCATTCTTGGCGGCTGCTCGCTGATCCCTGACTACCAGACCCCGGAATCGCCGGTGGCTGCGC AGTGGCCGCAAGGCCCGGCTTACTCGCCGACGCAGTCGGCGGAGGTTGCCGCCGCCGAACAGGGCTGGCGTCAGTTCTTCCACGACCCGGCCTTGCAGCA GCTGATCCAGACCGCGCTGGTGAACAACCGCGACCTGCGCGTTGCCGCGTTGAACATCGACGCCTACCGTGCGCAGTACCGCATCCAGCGTGCCGACCTG TTCCCTGCGGTTTCGGCCAACGGTAGCGGCAGCCGCCAGCGCGTACCGGCGAACATGTCGCAGACGGGCGAGGCAGGCATCACCAGCCAGTACTCGGCCA CCCTGGGCGTCAGCGCCTATGAGCTGGACCTGTTCGGCCGCGTGCGCAGCCTGACCGAGCAGGCCCTGGAAACCTACCTGTCCAGCGAGCAGGCGCGTCG CTCCACGCAGATCAGCCTGGTGGCCAGCGTGGCCAACGCCTACTACACCTGGCAGGCCGACCAGGCGCTGTTCAAGCTGACCGAAGAAACGCTGAAGACC TACGAGGAAAGCTACAACCTCACCCGTCGCAGCAACGAAGTCGGCGTAGCCTCGGCACTCGACGTCAGCCAGGCGCGTACCGCCGTGGAAGGCGCCCGGG TCAAGTACTCGCAGTACCAGCGCCTGGTCGCCCAGGACGTCAACAGCCTGACCGTGCTGCTGGGCACCGGCATTCCCGCCGACCTGGCCAAGCCGCTGGA GCTCAATGCCGACCAACTGGCCGAAGTACCGGCCGGCCTGCCGTCGGACATCCTCCAGCGTCGCCCGGACATCCAGGAAGCCGAGCACCTGCTCAAGGCC GCCAATGCCAACATTGGCGCGGCCCGCGCAGCGTTCTTCCCGAGCATCAGCCTGACCGCCAATGCCGGCAGCCTGAGCCCCGACATGGGCCACCTGTTCT CGGGCGGCCAGGGCACCTGGCTGTTCCAGCCGCAGATCAACCTGCCGATCTTCAACGCCGGCAGCCTGAAGGCCAGCCTGGACTACTCGAAGATCCAGAA GGACATCAACGTCGCCAAGTACGAAAAGACCATCCAGACCGCGTTCCAGGAAGTCTCCGATGGCCTGGCGGCGCGCAAGACCTTCGAAGAGCAACTGCAG GCGCAACGTGACCTGGTGCAGGCGAACCAGGACTACTACCGCCTGGCTGAGCGCCGCTATCGCATCGGTATAGACAGCAACCTGACCTTCCTCGACGCCC AGCGCAACCTGTTCAGCGCCCAGCAGGCACTGATCGGTGACCGCTTGTCGCAGCTGACCAGCGAGGTCAACCTGTACAAGGCACTTGGCGGTGGCTGGTA CGAGCAGACCGGGCAGGCCAACAACCAGCAGGCAGCGGTGGAAGCACCGAAAGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGCCCTGTGATAGCAAAGAGCCCACCTGTAGCGGTGGGCTTTTTGTTTGTCAGTTGCCTGTGCAGGCCTCTTCGCGGGTGAACCCGCTCCCACAATGT TTTGCATGAATGCTGAAGGCTGTGCAGTACCTGTGGGAGCGGGTTTACCCGCGAAGAGGCCAGTGCAGGAGAACAATTAACCAACCAGAACATTCCGTTC GATTATCGCCCGTTTCCGTTTGTGGCGAATTGCCTCACCCCAGCCCTACCCCGCACCATCCTCCCCACGCAACGTTGCCCCGGTTCATCCCAAAAGACCC GCACCTGCAGGCCGCATCCTGCAGCGTACCGGCTCGCCCATAAAAACAAGAGATCCACGACAGATGAGCACTTTGCAACCCGCACGCCAGCTGCTTCCCG GCCTGTTGGCCATGTCCTGCGCACTCCCCGTATTCGCCGCCGACCAAGGTGGTTTCCTGGAGGACGCCAAGGCCACCCTCAACCTGCGCAACTTCTACAT
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| Amino Acid Sequence |
>adeC/adeK/oprM family multidrug efflux complex outer membrane factor
MTKSLLSLAVTAFILGGCSLIPDYQTPESPVAAQWPQGPAYSPTQSAEVAAAEQGWRQFFHDPALQQLIQTALVNNRDLRVAALNIDAYRAQYRIQRADL FPAVSANGSGSRQRVPANMSQTGEAGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQISLVASVANAYYTWQADQALFKLTEETLKT YEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQDVNSLTVLLGTGIPADLAKPLELNADQLAEVPAGLPSDILQRRPDIQEAEHLLKA ANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQ AQRDLVQANQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGWYEQTGQANNQQAAVEAPKG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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