Pseudomonas sp. C5pp, RR51_RS11310

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAATAAGGAAAGCGCTGTGCGTCTGCGCCTGATCGCGGTTGGCTCGCGCATGCCGAAGTGGGTCGAGGAAGGCTGGCATGAATATGCCAAGCGCCTGCCC GCCGAGCTGTCGCTGGAGCTGGTGGAAATCCCGCTGAACACCCGTGGCAAGAATGCCGACGTCGCCCGCCTGATCCGTCAGGAGGGCGAAGCCATGCTGA GCAAGGTTCAGCCAGGGGAACGCATCGTCACCCTCGAGGTCCATGGCAAGCCCTGGAGTACCGAGCAGCTGGCGACCGAGCTGGACCGCTGGCGCCTGGA TGCGCGCACGGTGAATTTGATGGTGGGCGGCCCGGAAGGCCTGGCGCCCGAGGTCTGTGCGCGCGCCGAGCAACGTTGGTCGCTGTCGCCGCTGACCTTG CCGCACCCATTGGTAAGGATACTCATCGGCGAGCAGATTTACCGCGCCTGGACCGTGCTGTCCGGGCATCCTTACCATAAATGAGCCTGTAAGCAGTCCG
DNA Sequence for Gene
>RR51_RS11310
ATGTCGCAGCCGATCCGTCTCAAGGACCACGAGAAAGACGCCCGCCTGGTGCGCAACCGCGTCGTGGTCGGCGCAGTCGCGATCATGCTGCTTATCTGCG TGCTGATTGCGCGTCTGTACTACCTGCAGGTCATCCAGCACGACTATCACTCGACGCTGTCGGAGAACAACCGGGTGCATGTGCAGCCGATCCCGCCGAC CCGCGGGTTGATCTTCGACCGAAACGGGGTGATCGTCGCCGACAACCGGCCCAGCTTCAGCCTGTCGATGACCCGCGAACGTGCGGGTAACTGGCAGGAA GTGCTGGATACCATCGTCGAAGTGCTGGAGTTGACGCCCGACGACCGCGCCCTGTTCGAGAAGCGCATGCGCCAGGGCCGCCGGCCGTTCGAGCCGGTGC CGATCCTGTTCGAACTCAACGAAGAGCAGATCGCCCGTGTGGCGGTGAACCAGTTCCGCCTGCCGGGCGTGGAAGTGGTAGCCCAGTTGGTGCGCCATTA CCCGCAGGGCGCGCATTTCGCCCATTCGGTGGGGTATGTGGGGCGGATCAACGAGAAAGAGCTGAAAACCCTCGACCCGGTGAACTACAGCGGCACCCAC CACATCGGCAAGACCGGCATCGAGCGCTTCTACGAAGCCGACCTGCATGGCCAGGTGGGCTACGAGGAAGTCGAGACCAACGCCCGCGGCCGCGTGCTGC GGGTGCTCAAGCGCACCGACCCGAAACCGGGCAAGGACATCGTGCTGAGCCTGGACATCAAGCTGCAGGAGGCCGCCGAGGCTGCCCTGGGTGGCCGGCG TGGTGCGGTGGTGGCGCTCGACCCGCGTACCGGCGAGGTGCTGGCGATGGTCAGTCAGCCCAGCTTCGACCCCAACCTGTTCGTCACCGGCATCGGCTTC AAAGCCTATGCCGAACTGCGCGACTCGATCGACCGACCGCTGTTCAACCGCGTGCTGCGCGGCCTGTACCCGCCAGGTTCGACCATCAAGCCGGCGGTGG CCATCGCCGGCCTGGACAGCGGCGTGGTCAATGCCGGCAGCCGGGTGTTCGACCCGGGCTACTACCAGTTGCCCAACTACGACCACAAATACCGTAACTG GAACCGCTCGGGCGATGGCTGGGTCGACCTGGACACCGCGATCATGCGCTCCAACGACACCTACTTCTACGACCTTGCCCACAAGATGGGCATCGATCGG CTGTCCAGCTACATGAACAAGTTCGGCATCGGCCAGCGGGTTTCCCTCGACATGTTCGAGGAATCCGCCGGGCTGATGCCATCGCGTGAATGGAAGCGCG CCACCCGCCGCCAGGCCTGGTTCCCCGGCGAAACCCTGATCCTCGGCATCGGTCAGGGCTACATGCAGGCCACGCCGCTGCAACTGGCCCAGGCCACTGC GCTGATCGCCAACAAGGGCGTGTGGAACCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGCCGCCGGTGGACGACAACCCCATGGAAAACATCGTGCTG CGTGACAAGTCCGACTGGGCCAAGGTCACCCATGGCATGGAGCAGGTGATGCACAACGCCCGCGGTACCGCACGCAAGGCGGCCATTGGCTCGCAGTACC GCATTGCCGGCAAGAGTGGTACCGCCCAGGTGGTGGCAATCAAGCAGGGCGAGAAGTACGACCGCAACAAGCTTCAGGAGCGCCACCGCGACCACGCCCT GTTCGTCGCCTTCGCCCCGGCCGAGGACCCGAAGATCGTGGTTTCGGTGATGGTCGAGAACGGTGAGTCCGGCTCGGGCGTTGCCGCCCCAGTGGTGCGC CAGGTGATGGACGCCTGGTTGCTCGACGAAAACGGCCGGCTCAAGCCCGAGTTCGCGCCTGCCACCGTTACCCAGGAATCAGCCCTGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGAACAATTTCGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGGCGCGCCAGCTTTCTGCAGCGCATCCACGTCGACGGCCCTTTGCTGATCATTCT GCTGACCCTCGCGGCCGGTAGCCTGTTCGTCCTGTATTCGGCCAGTGGCAAGAACTGGGACCTGCTACTCAAGCAAGCCACCTCGTTCGGCATCGGCCTG GTGTCGATGTTCATCATCGCCCAGCTAGAGCCGCGCTTCATGGCTCGCTGGGTGCCGCTGGCCTACCTGGCCGGGGTGCTGTTGCTGGTGGTGGTGGACG TGATGGGCCACAACGCCATGGGCGCCACGCGCTGGATCAACATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAGTTCATGAAGATCATCATGCCGGCGAC CATCGCCTGGTACCTGTCCAAGCGCACGTTGCCGCCGCATCTGAAGCATGTGGCGATCAGCCTGGTGCTGATCGGCGTGCCGTTCATCCTGATCGTGCGC
Amino Acid Sequence
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRNRVVVGAVAIMLLICVLIARLYYLQVIQHDYHSTLSENNRVHVQPIPPTRGLIFDRNGVIVADNRPSFSLSMTRERAGNWQE VLDTIVEVLELTPDDRALFEKRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYSGTH HIGKTGIERFYEADLHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGIGF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNAGSRVFDPGYYQLPNYDHKYRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDR LSSYMNKFGIGQRVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGQPPVDDNPMENIVL RDKSDWAKVTHGMEQVMHNARGTARKAAIGSQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEDPKIVVSVMVENGESGSGVAAPVVR QVMDAWLLDENGRLKPEFAPATVTQESAL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site