Pseudomonas sp. C5pp, RR51_RS09790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig09, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACAGCGGCGGCAGCACCAGCGCCCTCACCCGCCAGGCCAGCGCCAACAGTTCCAAGGCACTGGATGAACTGGATGCCACGCGCCAGGAAGTGATCTCCGA CACCACCCGCGAGTACCGCGGCGTACAGAGTGGCGCCTTGCGCATCCAGGCGCTGGAAAAGGCCGTGGCATCCAACGAACGCTCGTTGCTTTCGGCCCGC AAGGGCTTCAGGGAGGGCGGCACCAGCACCAACTCGGATGTGCTCAATGCCGAGGAATTGCTTTTTGACGCCCGGCATGACCTGTTCGAGGCGAAGCTGA ACTACCTGATGTCGCGGCTGCGCCTGGCATCGTCGGTGGGCAGCCTGGGAGATGACGATATCCAGCAGATCAACGATTACCTCGGGCCGGAACTGGTAGT AAGCAACTGACTATCGGCGGCCCGCTCCCACAGCGGCGCCTACCGCATTTTGTTCCATTTCAGGCTATGATCGGTGACCCCGCCGCGGACGCCATGCCCC
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| DNA Sequence for Gene |
>RR51_RS09790
ATGCCCGTAGACCTGCAATCGTTATACCCCAGGCTGATCCACCTGATGCTGGACACGGTGTTCGTGGTCGACAGGGACAACCAGATCGTTTTCGTCAGCG ATGCCTGCGAGGCGCTGCTGGGCTACCAGGCCTGCGAGCTGATCGGCACCCCGATCACCGACTACATGCACCCTGACGACCTGGCGATTACCCGCGCGTC GATCGTACGGGTGATGAACGGCCAACCCCATTACGACTTCCGTAACCGCTACATCCGCAAGGATGGCAGTATCGTGCATATCCTGTGGTCGGCCTCCTGG TCCGATGAGGCCAATGCCCGCATTGGTGTAGCGCGGGATATCACCGCCCAACACCAGGCCGAGGAAGAATTGCGTTTCCTGGCCCACCATGACCCGCTGA CTCGCCTGGCCAACCGGGCCATGTTCAATGAGCGGCTGGGCACCGCACTTGTCGCGGCCCGGCACCACAACCACCCGCTGGCGTTGCTGTTCATCGATAT CAATGACTTCAAGGATATCAACGACAACCACGGCCACAGCGTGGGTGACCGGGTGCTGTGCATTCTGGCGCGGCGCCTGGAAGGCTGCGTTGGGGCGGCC GATACAGTGGCGCGGATGGGCGGTGACGAGTTCACCGTGCTGTTGACCGACTACGCCTCGCCAGAGGCCATTGCCGAGCAGGTGGCACGCATCCTGGCAG CCATGGCCGAGCCACTCGGCGCCGAGTTTGCGGGTATCGGAGCGCCGTCCTGCAGCATTGGCGTGGCCCGTTTCCCCGAAGACGGCAATGATGCCGACAT GCTGCTGCGCCATGCTGATGGCGATATGTACCGGATCAAGCGACAGCGCGCTGCGGCCAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACCAAAGGGAAGAAAATGACGGAACACCTACAAGGCGCCGCCGAGCAAACGCGTGGTCACATCAGCCGGATCGAGGCCTTGCTGTTCTGGCTGAAGCT GGGTTTCATCAGCTTCGGCGGCCCGGCGGGGCAGATAGCGATCATGCATCAGGAACTGGTGGAGCGGCGCCGCTGGATCAGCGAGCGGCGCTTTCTGCAT GCCCTCAACTACTGCATGCTGCTGCCTGGCCCCGAGGCCCAGCAACTGGCCACCTACATTGGCTGGCTGATGCACCGCACCTGGGGTGGGGTGATTGCCG GCACCCTGTTCGTGCTGCCGTCGCTGTTCATCCTGATCGGCCTGTCGTGGGTCTATTTGGCCTGGGGCGAAGTGCCGGTGGTGGCTGGCATTTTCTACGG GATCAAGCCGGCCGTGACCGCCATCGTCGTGCATGCCGCACATCGCATTGGCACGCGCGCCCTGAAAAACGGCTGGTTGTGGGCCATTGCCGCGGCCTCG
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| Amino Acid Sequence |
>diguanylate cyclase
MPVDLQSLYPRLIHLMLDTVFVVDRDNQIVFVSDACEALLGYQACELIGTPITDYMHPDDLAITRASIVRVMNGQPHYDFRNRYIRKDGSIVHILWSASW SDEANARIGVARDITAQHQAEEELRFLAHHDPLTRLANRAMFNERLGTALVAARHHNHPLALLFIDINDFKDINDNHGHSVGDRVLCILARRLEGCVGAA DTVARMGGDEFTVLLTDYASPEAIAEQVARILAAMAEPLGAEFAGIGAPSCSIGVARFPEDGNDADMLLRHADGDMYRIKRQRAAAS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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