Pseudomonas sp. C5pp, RR51_RS08975

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig08, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGAAATCCAGCAGATCGCCGACCCGCGCACGCTGTACGAAGAACCCTGCAACACCTTCGTCGCCAACTTCATCGGCGAGAACAACCGCATCAACGGCACC TTGCTGGCCAGTGATGGCAAGCGCTGCCAGGTGCAGTTGCCGCGTGGCGAGCGGGTCGAGGCGCTGGCGGTGAATGTCGGCCAGGCCGGCGAGCCGGTGA CCCTGTCGATCCGCCCGGAGCGCGTGCGCCTGAATGGCCACAGCGAAAGCTGTGTTAACCGTTTCTCGGGCCGGGTGGCGGAATTCATTTACCTGGGCGA CCACGTGCGGGTGCGCCTGGAAGTTTGCGGCAAGGGCGACTTCTTCGTGAAACAGCCGATTGCCGAGCTCGACCCGGCCCTGGCCGTGGGCGATGTGGTA CCGCTGGGCTGGGAGGTGGAGCACGCCCGCGCGCTCGATCCGATTGCCGAAGCCCATTGATGGATTGCTTCACCAACCCTGTACTGTGGAGAGAATAATA
DNA Sequence for Gene
>RR51_RS08975
ATGCGCAAGCAGTTGAAACTGACCGCCCTGGCCCTGGGGCTGTTCGCCGCTGGCCAGGCCATGGCCGCAGACCTGACTGTTGTCTCGTTTGGTGGTGCCA ACAAGGCGGCCCAGGTGAAGGCGTTCTACGAACCGTGGGAGAAGGCCGGCAAGGGCAAGATCATCGCAGGCGAGTACAACGGCGAGATGGCCAAGGTCAA AGCCATGGTCGACACCAAGAGCGTTTCGTGGAACCTGGTGGAAGTGGAGTCGCCAGAGTTGGCCCGCGGCTGTGACGAGGGCATGTTCGAAGAACTCGAC CCGGCCCTGTTCGGTAATGAGGCCGACTATGTGCCGGGTGCCATTCAGCCATGTGGCGTTGGCTTCTTCGTATGGTCCACGGTGCTGGCCTACAACGCCG ACAAGCTGAAGACCGCACCGACCAGCTGGGCCGATTTCTGGGATACCAAGAAATTCCCGGGTAAGCGCGGCCTGCGCAAGGGCGCCAAGTACACCCTTGA ATTCGCCTTGATGGCCGACGGTGTGGCACCGAAGGATGTGTACCAGGTGCTGGGCACCAAAGAGGGCGTGGACCGCGCCTTCAAGAAGCTCGACGAACTC AAGCCAAGCATCCAGTGGTGGGAAGCCGGCGCCCAGCCGCCGCAGTACCTGGCCTCGGGTGACGTGGTCATGAGCTCTGCCTACAACGGCCGCATCGCTG CGGTGCAGAAAGAGAGCAACCTGAAGGTGGTGTGGAACGGCGGCATCTACGACTTCGATGCCTGGGCCATCCCGAAAGGTGCCAAGGATGTCGAGGAAGC GAAGAAATTCATCGCCTTCAGCGTGCAGCCCGAGCAGCAGAAGACCTACTCCGAGAACATCGCCTATGGCCCGGCCAATTCCAAGGCCGTGAGCCTGTTG TCGGACGATGTGAAGAAGGACATGCCGACCACGCCTGAAAACATCGCCAACCAGGTGCAGATCGATGTGGCCTTCTGGGCCGACAACAGCGAGCAGCTGG AGCAGCGCTTCAACGCCTGGGCGGCGAAGAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACGACCAGTGTAGGGGGCCGCTTTGTGGCCCATCGCCGGCAAGCCAGCTCCCACAGGGGGCCGCTGCCCTGGAGCCAGCGCAGTATCTGTAGGAGCTGGC TTGCCTGCGATGGGCTGCGCAGCAGCCCCATTTTCAGTTCGTATCGCGGAGTTCGCCATGGCCATTGCAGTGCCCCTCAAAGAAGGCGCAGGTCCAAGTC TCAAGCAGCGCCTCAAGCATGCCGAGCGGGTCAACCGCTGGAAGGCGCAGGCGTTGATCGCGCCGCTGGCGCTGTTTCTCCTGCTGGTGTTCCTGGTGCC TATTGCGGCGCTGCTGTACAAGAGCGTCGGCAACCCGGAAGTGGTTGGCGGCTTGCCGCGCACCGTTGGCGTCATCACCCAGTGGGATGGCAAGAGCCTG CCGGGCGAGGACGTTTACAAGGCGTTGAGCCAGGATTTGGCCGAATCGCGCAAGAACCAGACCTTGGGCGACCTTTCCAAGCGCCTGAACATGGAGCTTG
Amino Acid Sequence
>spermidine/putrescine ABC transporter substrate-binding protein
MRKQLKLTALALGLFAAGQAMAADLTVVSFGGANKAAQVKAFYEPWEKAGKGKIIAGEYNGEMAKVKAMVDTKSVSWNLVEVESPELARGCDEGMFEELD PALFGNEADYVPGAIQPCGVGFFVWSTVLAYNADKLKTAPTSWADFWDTKKFPGKRGLRKGAKYTLEFALMADGVAPKDVYQVLGTKEGVDRAFKKLDEL KPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGAKDVEEAKKFIAFSVQPEQQKTYSENIAYGPANSKAVSLL SDDVKKDMPTTPENIANQVQIDVAFWADNSEQLEQRFNAWAAKK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site