Pseudomonas sp. C5pp, RR51_RS08060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig07, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGAGCATGCACCTCGACCTGCTCGGCCAACTGCCGCCAGCTGTAGCGCAGGCCCTGATGGCGCGACACCAGGGCCTCGCCGTCGGCACAACGGGCCACG GTGGCGTCGAAGGCCTGGCCGATGGTCTGGGTCAGCAAGGCTTGGTCCTGGCGACCGCGGGAATAGCTTGGTTGACTCATGGGTGTCCCTTCTTGTGGTT GTTCTGGGCACGACTGAAGCAAGCGGGAATACTCTGGCGCAGATTTACGTTTACGTAAAGGTGATGAGTCGATTGACAGTAAGTGCATGCAGGTTTACGT TAACGTAAAGGTGAAAACGACATCGGGTTTGTCGGCGCACCACCGACCCTGTGGGAGCGGGTTTACCCGCGAATGCGATCATCCAGGCAATGACGGTGGC CCTGCTGACGCATTCGCGGGTAAACCCGCTCCCACAGGGCCGGTGGATAGCCCTTGAGCTACGGTGTTACCCAATTTCAAGAACAAGAAGGTGCCCCAGC
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| DNA Sequence for Gene |
>RR51_RS08060
ATGCATTACCCCACCCTGAACTTCGCCCTGGGCGAAACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCCGAACTGGCTCCGCGCGCCG CGCAAATCGACCACGACAACCTGTTCCCTGCCGACATGTGGCGCAAGTTCGGCGACATGGGCCTGCTGGGCATCACCGTGCCGGAAGAATACGGCGGTGC CGGCCTGGGCTACCTGGCCCACGTGGTTTCGATGGAAGAAATCAGCCGTGGCTCGGCCTCGGTGGCACTGTCCTACGGTGCCCACTCCAACCTCTGCGTC AACCAGATCAACCGCAACGGCAGCCACGAGCAGAAGCTCAAGTACCTGCCCAAGCTGATCAGCGGCGAGCACATCGGCGCCCTGGCCATGAGCGAGCCCA ACGCCGGTTCCGACGTGGTATCGATGAAGCTGCGCGCGGAAAAGCGCGGCGACCACTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCGGA CGCCAACACCTACGTGATCTATGCCAAGACCGACCTGGAAAAGGGTGCGCACGGCATCACCGCGTTCATCGTCGAGCGTGACTGGAAAGGCTTCAGCCGC AGCAACAAGTTCGACAAGCTGGGCATGCGTGGCTCCAACACCTGCGAGCTGTTCTTCGACGGCGTCGAAGTGCCGGAAGAAAACATCCTCGGCCAGCTCA ACGGTGGCGTGCGCGTGCTGATGAGCGGCCTGGACTACGAGCGCGTGGTGCTGTCCGGCGGCCCGACCGGCATCATGCAGAGCTGCATGGACCTGGTAGT GCCCTACATTCACGACCGCAAGCAGTTCGGCCAGAGCATCGGCGAGTTTCAGCTGATCCAGGGCAAGATCGCCGACATGTACACCCAGCTCAACGCCAGC CGTGCCTACCTGTATGCCGTGGCCCAGGCCTGCGACCGTGGCGAGACCACCCGCAAGGACGCCGCCGGGGTGATCCTGTACACCGCTGAGCGCGCCACGC AAATGGCCCTGGAGGCGATCCAGATTCTCGGCGGCAACGGCTATATCAACGAATTCCCGGCAGGCCGCCTGCTGCGCGACGCCAAGCTGTACGAGATCGG TGCCGGCACCAGCGAAATCCGCCGGATGCTGATCGGCCGCGAACTGTTCAACGAAACCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACAAGGGACGGGCGCACATGGCTACCTTGCACACCCAGATCAACCCGCGTTCGGCAGAGTTCGCCGGCAACAGCGCGGCCATGCTCGAACAGGTCCAG GCCCTGCGCGGCCTGCTCGCCCAAGTGGCCCAGGGCGGTGGGCCCAAGGCTCAGGAGCGGCACACTTCGCGTGGCAAGCTGCTGCCGCGCGAGCGTATCG ACCGCCTGCTGGACCCGGGCTCGCCGTTCCTCGAAATCGGCCAACTGGCTGCCCATGAGGTGTATGGCGAAGACGTGCCCGCTGCGGGCGTGATCGCCGG CATCGGCCGCGTCGAAGGCGTGGAATGCATGATCGTGGCCAACGACGCCACGGTCAAAGGCGGTTCCTACTACCCGCTGACGGTGAAGAAGCACCTGCGT GCGCAGACCATCGCCCTGCAGAACCGCCTGCCGTGCATCTACCTGGTGGACTCCGGCGGCGCCAACCTGCCACGCCAGGACGAAGTGTTCCCCGACCGCG
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MHYPTLNFALGETIDMLRDQVRTFVAAELAPRAAQIDHDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVSMEEISRGSASVALSYGAHSNLCV NQINRNGSHEQKLKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKRGDHYVLNGSKTWITNGPDANTYVIYAKTDLEKGAHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDGVEVPEENILGQLNGGVRVLMSGLDYERVVLSGGPTGIMQSCMDLVVPYIHDRKQFGQSIGEFQLIQGKIADMYTQLNAS RAYLYAVAQACDRGETTRKDAAGVILYTAERATQMALEAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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