Pseudomonas sp. C5pp, RR51_RS07915
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig07, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGACGATGGCGAGGATCCGGCGCGCTCCCCCATGGAAGAAAGTACCCCGGGCAGCTACGACGACCCGACCGTGGTGCTGACCTTGCCGCGCACCACCACC GTGGCCACCGAACCCGTCGCTACGCCCATGGCCGTGAAGATCCTGCAACTGCGCGACGACTCTCTCTTGCGCAACAGTGTTTACGAACTGCTGGACAAGG ACCCTGCCGAGGCACTGCGCAGCACCTACATACGCGATGACGATTACCTGCTGCGCCCTGGCCAGTTCAAGTTCATCCCCTTTGCGCCCATCGAGCCCGA AACGCGCTTCGTCGCGGTGATCGCCGACTACCGGAACCAGGAAAACGCCACCTGGAGCCAGGTGCTGCGCATTCCGCCCCGCGGGCACCAGATCATCCTG TCGGTTTTGCTCAACGACACGCAGCTCCTGCTCAAGGAGGAAGACTGATGGCGCCTGTAACCCTGCCCTTCTCGCTTACTCACGCTGACATGGAGCGCTC
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| DNA Sequence for Gene |
>RR51_RS07915
ATGAGTTCACGTAATCCTGTCCTGTGGCCGGAAGGCCTGTTCGTCAAACCGCAGCATTTCCAACAGGCCGCCCGTGCCGCCGAAGCGGCCCTGCATCAAC GTCTTGGCAGCCTGAACGCAGCCTTCTATGGCTTCAGCGAATTGCAGTTGAACGACGAGTATCTGAGCCTGGGCAAGGTCGCCATCACCCGTGCACGGGG CATCATGCCGGACGGCACGGTGTTCGATATCCCTGCGGACCTGCCACCACCGCCACCGCTGGAAATCGAAGACGACGGCGCGAAAGACAGCGAGATCTAC CTGTGCCTGCCGCTGCGCACCGAAGGTGGCCGTGAAGTAAGCTGGCCCGATAACCCCGCCAATTTCCGTTACAGCGCCCAGGCCCTGGAAATCAAGGACA CGCACAGCGCCGACGGTGACCTGGTGCAGGTTGACCTGGCGGTGCCCAACCTACAGCTCAAACGCAAGGCCGACGACAGCAGCGCCTACACCCGCCTGGC CGTGACGCGCATTCTGGAACGGCGCCCCGATGGCAGCCTGCAACTGGATGAAGGCTTCTATCCCACCAGCGTTTCAGTGCGCGCCGTACCCGCGCTGCAA CGGTACCTGGAAGAAATCACCAACTCCCTGCGCGAACGTGCGCGCAACCTCGCCGCCCGCATTGGCGCCTCAGGGCAGTCCGGCATCGCCGACATTCGCG ACTTCAACCTGCTGCAGGCCATGAACCGCTGGTGGCCGTGTTTCCAGCATCTGGCCAGGCAAGGGCAGACCCACCCTGAACAGTTGTACCTGTGCATGAG CCAGGCCTGTGGCGAGTTCGTGACGTTTACCGACGAGAGCCGGCTGCCGCAGGAATACCCCGCCTATCACCATACCGCGCTGCGCACCTCCTTCAAGCCG CTGGAGGACACGCTACGCCGGGCACTGAGCACGGTACTGCAACCCCGCGCCGTTTCGCTGCCGCTGGAGACGCTGGAGTACGGCTTGCTGACAACGACGC TGGAGGATCGCCGCCTGATCGACGAGGCCGACTTCATTCTGGCAGTGCGAGCCCACATGCCGCCTCAGACATTGCGTCGAATGTTCGTGCAGAAGGCAAA GGTCGTCTCGCTGGAATCGTTGAACGAGGTAGTGCCGCTGCAGCTTCCAGGTATTCCACTGGTGCCGCTGCCCGTGGCTCCTCGGGATCTGCCCTTCCAT GCAGGCTTCACCTACTTCGAGCTGGACCGTCGTTCCCCGGCTTGGGCGGGCATGGAGACATCCAGTGGCTTCGGTATCCACGTCGCGGGCGAGTTCCCGG GGCTGGAACTGCAGTTCTGGGCGATCAGGAGTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATGAAACAAGAAAACAGCCCCTCAACTGATGCCGAACAGGTCGAAAGCGAGCAACTGCACGCGATGCTCGAGGCGTCATTGTCCAACGACTCACCCGCA CCAACAGCGGCTGATGGAGCTGAACGAAAGCCGAAGGCAGAGCCAGTGTATGAAGGCTACCCGGCAGACCCAGACTTCCAGCTACGTGGCGGCTACGACA ACCTGATGCTGGATGCAGCTGCGCCACTGTTCGGCCTGGTGATACGCCTGCGCACACTGGATGCGCTGCCCAACATCAAGGAGGTGCACCAGCAGGTGCG CAACCAGATCGAGAACGTGCGTGAAGAGATGCGCCAGCACGGCTACGAGCCCGCTCAGTTGCTGGCGTACTCATACGGTCTTTGCCTTTTCATCGATGAA GCTGTCATGGACAGGCCTTGGGGTAAAACCAGCTGCTGGAGCCAGGAACCCCTGCTCAGCATCTTCCACGACGAAACCTGGGGTGGAGAGAAAGTCTTCA
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| Amino Acid Sequence |
>type VI secretion protein
MSSRNPVLWPEGLFVKPQHFQQAARAAEAALHQRLGSLNAAFYGFSELQLNDEYLSLGKVAITRARGIMPDGTVFDIPADLPPPPPLEIEDDGAKDSEIY LCLPLRTEGGREVSWPDNPANFRYSAQALEIKDTHSADGDLVQVDLAVPNLQLKRKADDSSAYTRLAVTRILERRPDGSLQLDEGFYPTSVSVRAVPALQ RYLEEITNSLRERARNLAARIGASGQSGIADIRDFNLLQAMNRWWPCFQHLARQGQTHPEQLYLCMSQACGEFVTFTDESRLPQEYPAYHHTALRTSFKP LEDTLRRALSTVLQPRAVSLPLETLEYGLLTTTLEDRRLIDEADFILAVRAHMPPQTLRRMFVQKAKVVSLESLNEVVPLQLPGIPLVPLPVAPRDLPFH AGFTYFELDRRSPAWAGMETSSGFGIHVAGEFPGLELQFWAIRSE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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