Pseudomonas sp. C5pp, RR51_RS04985
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGCTGGGCAAGCAGCCAAAAGGCGCCAAGGAGCGCGAAGGCGACAAGAAAACCCCCGAGGGCCTTTACTGGCTGGACTGGCGCAAGCAAAGCGACCGT TTCAACCTGGCCATACACATCAACTACCCGAACATCAACGACGCGGCCCGTGCCACTCGTGAAGGGGTGAGTGCCGGCAGCATGATCATGATCCATGGCA CGCCGATCAACGACGAGTATCCGGAGTGGTACTTCCACACCCTGGACTGGACGGATGGGTGTATTGCCATGCGTAACCGCGACATGCAGGAAGTGTGGGA CCTGGTGCGGGATGGCACGTTGATCGAAATTCGGCCCTGATAGCGGGCCTTTCAACTGATGCTGTAGGAAGCTTCCCACCATCAGGCAAGAACGCGCCCT ACAAGCGCTTAGGCCGGGTACTGCATCCAGGCGAACCCCTTAATTTTTAGCATCCACGCAGACGAGTACGAAATCCGTACATCATTTGCGGGGTGCTTCA
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| DNA Sequence for Gene |
>RR51_RS04985
ATGCCGTTCCACATTCATCGCGCCACCTGCTGGGCGCTCACCTGCTGCCTGTCAGGTTTGCTGGCCGCACCACAGGCGTTGGCCGACGACCCGGCCAGCC AGCAACTGCGCGATCAGCAGCGCGGGCTGCGACAGCTGGAACAGCAACAGCGCCTGGAACGCTGGCAGCGCCAGCCCGCCCCTGCCGAAAGCCACGACGC CACCGCACCCCTCCCCCACGACCAGCGCTGCTGGGCCATCACCGGCGTACGCGTGGCCGGCAACCGCGAGCTTTCCGACTCGGCGCTAACGCCAACCCTC CGCAGGTTCATTACCCCGTGCATGGGCATCGCGGAAATCAACGGGCTGCTGAAAGCCATCACCCAGCGCTATGTGCAAGCCGGATACCCGACCAGCCGGC CCTACCTGCAGCAACCGCCACAAGACGGCGCACCGCTGAACCTGGTCATCGTCGAGGGGTTCGTCGAGTCCATCGAAATGGCCGGCCCCGAGTTGCCCCT GTCGCTCCCCGGCGCCTTTCCCGGCCTGCTCGGGCAGCCACTGTTCCTGCCAGCCCTGGAGCAAGGCCTCGACCAGCTCAACCGACTGCGCGCTTATGAC CTGTCCGCAGAGTTGCTACCCGGCGAACTGCAGGGCGGCACCCGGGTTGTCGTGCAGCCGCGCAAGGTGGCCTCGCGCGGGCACCTGGACAGCCGCTTCG ACAACCGCGGCAGCGACCTGACCGGGCGTCATCGCCTGAACTTAGGCTTCGGCCTGGACAGCCCGCTGGGCCTCAATGATGACCTGCGCCTGTCACTGAA CGGTACGGTGCTCGATGCGCCCGGGCAAAGCCAAGGCATCTCGCTGTACTACAGCATCCCCTACGGCGCCTGGACCTTCGCGCTCAGCGCCAGCGAGCTG CGCTACGAGGCGCCGCTCCCCCACAGCCGCCAGGTAGCCGACGGCAGCAGCAGCTACCAGGGCCTGAGCGTCGAACGGGTGCTGTGGCGCAACCAGCAAG GCATGCTCAGCGCCAGCGCCCGGCTTGACCGCAAGCAAATGGTCAACCGCAGCGCGGGCGCGGTGATCGTCCAGCAGAGCCCCACCCTGGTCTGCGTGGA AGCGGGTATCAACCTGCTGTGGCTCCAGGGCGGCCTGTGGAATGGCTACCTCGGTGTCGCCCAGGGCATCGATGCCTTCGGCGCCGACCGCTCACCGCTG GGAGCGGAACGCCTGCGCCCGGATTTTCGCAAGTACCGCGCCAACCTGCTGCACCTGCGCCAGGGCCCGGCCAGCCACCCATGGCGCTGGCAGAGCGAAC TGGCTCTGCAATACAGCAGTGACCCGCTACCCGCCGTCGAGCAGTTGCTGGCCAGCGACGATTCGGCCGTGCGCGGGTTTCGCCTGCGTACCTACTCCGG TGCCAGCAGCGCCGTCTGGCGCAACACCGTCAGCCAGCCGCTGCCGGGGGGCTGGGCCGCTCCCCTGCAAGTACGCCCCTACATCGGCCTGGACCTGGGC TGGACCCGCACTGCCGAAGGCAAGCCTTCACAACGCCTTGCCGGGGCCACCGCCGGTGCCGAACTGAGCCTGCCCGGCAGCCACCTGCGCCTGGGTTACC AACGCGCGCTGTACGCCAGCGACCTACCCCGCCCGCTGCTGGAACCCGGTTTCTGGGTAGTGGAACTGGCCCTGAACATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCACCCACAACAAAGAGAACGAGAACATGCAAACACTCTCGCAGTCGTCTTCCCGCCCAGATACCTTGCGCTGGGCCATCTTCCTCGCCCTGCTCGGGC CCGGCGCCGCACTGGCCCAGGGCGGCCTGACAGCAACCAGCGGCCCCGGCGGCACACCGGTCATCAACGACGGCCACGGCGTCCCGGTCATCGATATTGT CGCGCCAAACAGCAACGGGCTGTCGCACAACCAGTTCCTCGACTACAACGTCGACCGCTCCGGGGTGGTGCTGAACAATGCCACCCAGGCCGGGCAGTCG GAGCTGGCCGGTGCCCTGGCGGCCAACCCGCAATTCCAGGGCCAGGCCGCCTCGACCATCCTCAACGAGGTGGTCAGCCGCAACGCCTCGCTGATCGAAG GGCCGCAGGAAATCTTCGGGCGCCCGGCCGACTACATCCTGGCCAACCCCAATGGCATCACCCTCAACGGCGGCAGTTTCATCAACACCACGCGCGCCGG
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| Amino Acid Sequence |
>TPS family activation/secretion protein
MPFHIHRATCWALTCCLSGLLAAPQALADDPASQQLRDQQRGLRQLEQQQRLERWQRQPAPAESHDATAPLPHDQRCWAITGVRVAGNRELSDSALTPTL RRFITPCMGIAEINGLLKAITQRYVQAGYPTSRPYLQQPPQDGAPLNLVIVEGFVESIEMAGPELPLSLPGAFPGLLGQPLFLPALEQGLDQLNRLRAYD LSAELLPGELQGGTRVVVQPRKVASRGHLDSRFDNRGSDLTGRHRLNLGFGLDSPLGLNDDLRLSLNGTVLDAPGQSQGISLYYSIPYGAWTFALSASEL RYEAPLPHSRQVADGSSSYQGLSVERVLWRNQQGMLSASARLDRKQMVNRSAGAVIVQQSPTLVCVEAGINLLWLQGGLWNGYLGVAQGIDAFGADRSPL GAERLRPDFRKYRANLLHLRQGPASHPWRWQSELALQYSSDPLPAVEQLLASDDSAVRGFRLRTYSGASSAVWRNTVSQPLPGGWAAPLQVRPYIGLDLG WTRTAEGKPSQRLAGATAGAELSLPGSHLRLGYQRALYASDLPRPLLEPGFWVVELALNI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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