Pseudomonas sp. C5pp, RR51_RS04085

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig03, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GACCGCGTTCCAGATCGGTTTCATGATCTTCATCCCGTTCCTGATCATCGACATGGTAGTGGCCAGCGTGCTGATGGCCATGGGTATGATGATGCTGTCG CCGCTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTCGATGGCTGGGCGCTGATCATGGGTACCCTGGCCAGCAGTTTCGGCGGCGTCT GACGCCGTCAAGGAGAGCCGCCGATGACACCTGAAGTCGCTGTCGACCTGTTCCGTGATGCCTTGTGGCTGACCACCCTGATGGTCGCCATACTGGTGGT GCCCAGCCTGCTGGTGGGCCTGGTGGTGGCCATGTTCCAGGCCGCCACCCAGATCAACGAACAGACCTTGAGTTTCCTGCCGCGCCTGCTTGTGATGCTG GTCACGCTGATCATCGCCGGGCCGTGGCTGGTGCAGAAGTTCATGGAGTACTTCACCAGTCTCTATACCAACATTCCTCAGCTGATCGGTTGACGCGCCG
DNA Sequence for Gene
>RR51_RS04085
ATGCTGGAGCTGACCGACACGCAGATCGGCACCTGGGTCGCGACCTTCATCCTGCCGTTGTTCCGGGTGACGGCGGTGCTGATGACCATGCCGATCTTCG GCACCCGTATGCTGCCGGCGCGGGTGCGCCTGTACGTGGCGGTGGCCATCACGGTGGTGATCGTCCCGGCCCTGCCACCCTTGCCCGAGTTCGACCCGTT GAGCCTGCGCGGCCTGCTGCTGTGTGCCGAGCAGGTCATCGTCGGGGCGTTGTTCGGGTTGTCGTTGCAGTTGCTGTTCCAGGCTTTCGTGATCGCAGGC CAGATCGTCGCGGTGCAGATGGGCATGGCCTTCGCATCGATGGTCGACCCGGCCAACGGCGTCAACGTCGCGGTGATCAGCCAGTTCATGACCATGCTGG TGAGTGTGCTGTTCCTGCTGATGAACGGCCATCTGGTGGCGTTCGAGGTACTGACCGAAAGCTTCACCACCTTGCCGGTAGGCAACGCGCTGGTGGTCAA TCAGTTCTGGGAACTGGCGGGGCGCCTGGGTTGGGTGTTCGGTGCCGGCCTGCTGCTGATCCTGCCGGCTATCGCCGCGCTGCTGGTGGTGAACATCGCT TTTGGCGTAATGACGCGTGCCGCGCCGCAGTTGAACATTTTCTCCATCGGTTTTCCGCTGACCCTGGTCATGGGTATGTTCATTTTCTGGGTCGGCCTGG CCGACATACTTTCCCATTACCAGGCATTGGCCAGCGAAGCGCTGCAATGGCTGCGTGATCTGGCAAGGGCGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCATGGCGGAAAGCGAAAGCGGTCAGGACAAGACAGAAGAACCCACCGACAAGCGCAAGCGCGATGCCCGCGAGAAAGGCGAGATCGCGCGTTCCAAAGA GCTGAACACGGTGGCGGTGACCTTGGCCGGTGCCGGTGGCCTGCTGGCGTTCGGCGGCCACCTGGCCGAGACGCTGCTGGCGATCATGCGCATGAACTTC AGCCTGACCCGCGACTTCATCGTCGATGAGCGCGCCATGGGTGCCTTCCTGCTGGCCTCGGGCAAGATGGCCATCTGGGCGGTGCAGCCGATCTTGATCC TGTTGTTCGTGATTTCCTTCGTCGCGCCGATAGTCCTGGGCGGTTTCCTGTTTTCCGGCAGCCTGCTGCAGCCGAAATTCAGCCGCATGAATCCCTTGTC GGGGATCAAGCGCATGTTCTCGATGAACGCCTTGACCGAGCTATTGAAGGCGCTCGCCAAGTTTTTCGTGATCCTGGTCGTGGCGGTGGTGGTGCTGGTC
Amino Acid Sequence
>flagellar biosynthesis protein FliR
MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRGLLLCAEQVIVGALFGLSLQLLFQAFVIAG QIVAVQMGMAFASMVDPANGVNVAVISQFMTMLVSVLFLLMNGHLVAFEVLTESFTTLPVGNALVVNQFWELAGRLGWVFGAGLLLILPAIAALLVVNIA FGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADILSHYQALASEALQWLRDLARAR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site