Strain | Pseudomonas sp. C5pp Contig02, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGGCCATGGCCCGCGCCCATGAAGACCTGTCGAAGAAGTTCCGCTACAACCAGCGCCGCGAACTACGCCTGCTGGAAGAGGCGGGCGGTGTGGTGCGCC CGATCAGCGACTTCAGCGCGCAGGAAATCGCCAGCATGTACTGCGACCTGTTCCAGCGCCGCTGGGGCTTCCCTGCCACCGGCGCCGAGCGCATGGCCGA GGTGCTGGAACGCCTGCGTGAGCTGCTGATCGGCTCGGTGCTGCTGCTGGACGGCAAGCCGATTGCCATCCAGCTGGTATACCGTGTCGAAGCGCCGGAA TGGATCAGCGTCGAGTACATCAATGGCGGTGTCGACCCTGAAACCAAGGCCTTCAGCCCCGGCAGCGTGCTGAGCTTCCTCAATACCCAGGCCGCCTGGG AAGACGCCCGTGCACGCAACAAGCCGCTGCGGTTCTCGTTCGGCCGTGCCGACCGCGAGTACAAGGACCGCTGGTGCAACCCCGTACCGGTGTATCAGGC
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DNA Sequence for Gene |
>RR51_RS01850
GTGAGTCGCAAGCAGCAGTTGCTCAAGCGCCACCGGCGCAACAAGCGCCTGGGCCTGTTGGCGGGCCTGGTCGCGCTGGTGGCCATAGGTGCGTTCAGCT GGTGGTGGTTGCCACTGCTGCTGTTGCCGCTGTTGTGGGCGGCCCACGAGGCCTGGTTTGCCGACCACCTGTTCTACGCGCCAGGCGAGGACTACGCCTA CGACTTCGGCGAGCAGACCCGGGAGGCTCCTGCCAGCCTGAGCGGCGGCTTGCTCAAGGCTGAGTGCGTGCTGCAGGGCAACGAAACCCTGGTCCTCGAG CTGCGGGTAAAAAGCAGCTGGCTGGGGCGCTTCCTAGACCCGCAGGTCGAGCTGGTGGCTGGCGAGCAGGCCGACCGGCAAACCTTCGAGCGCGGTGTCG ATGGCGTGCGCTTCCTCAACCTCACCGGCCTCGCCGCACCTCTGCAGGCTGGCGCGTTGCGCCTGCGTGGCCGGCATTGTCGGCTGGCGGGCCAGCCGCG CTTGTGGATAACCCCGGCGGTCGAGCTGCAACGGCGCCGGGTGATGGTGATCGCGCCGCATGCCGATGATGCCGAGCTGGCCGCTTACGGCCTTTACAGC CAGGCCGACGAAGCCTGGGTAGTGACCCTGACCGCCGGTGAAATCGAGGCCGAGCACTATCAGCAGATGGGCTTGGCAAAGGCCGAGGCCGCGCGCCTGA AGGGCCGCCTGAGGGCCTGGGATAGTGTTGCCGTGCCACGCTGGGCCGGTGTGGCGGAATCGCGTTGCGTGCAGCTGGGCTACTTCTGCCTGCAACTGCC TGCCATGCAGGCTGCGCCAGACCAGCCGGCCGCTTCTCGCGAGGCCGACCTCGCCGACATTCGCGTATTCCGCCGATTCAACCCGTTCCCGCTGCCGGCC GATGGCGATGGCGCGCCGACCTGGCGCAACCTGCTCGCCGACCTGCGGGCCTTGCTGGAAATGGCCAGGCCAGAGGTGCTGGTGATGCCGCACCCGCAGC TCGACCCGCACCCCGACCACATCTGTGCCCAGGCAGCGGTGCTGGAAGCCTTGCAAGGCCTGGCCTGGCAGCCGCAAACCCTACTGTGCTACGCCAACCA CCTGCATGACAACGACCGCTGGCCGATGGGCGACAGTGGTGATGGCGTGGCCCTGCCGCCACAGCAGGACGCTGTCCAGGCCTGGGCTCCTTGCAGCCTG GTACTGGACCTGGCGACCCAGCGCGACAAGGCCATGGCCCTGGGCATGATGCACGACCTGCAGCCGCCAGCACCGTTCAAACGCCGCTTGCGCCGCTTGT TGCAGCGCTGGTTGGCCGGGCGGCGGTCGTCGCCTTACGGCGAGAACGAATTCTTCCGCAAGGCCGTGCGCCGACATGAACTGTTCTGGCGGCGTGAGCT GTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCGCGCCCCATGGTTGACCGCGATGGCGCAGAGCGCCCAAGGAACCCAATGAAAGTCCTATTTCTGGTGCAGAAGGAACAGCGGGCGATTCTCGACCGCC TGTACGATGGCGTCGCGGCCAACTGCGAGTGCGACCTGCGCTGGTTGACCAGCGAAGACCAGCGCAACCTGCGCCGCTATTTCAAGCGTGAAGTGCAGGT CGAGCGTTATGACCGCATTGTTTTCTTCCTGCGTTTCAAACAGGAAATCCGTCAGGCGGCATTCATCCGTACGGTGCCGAACCTGGTCATCCTCGAGCAC GATGCCTACCAGAACTACATCCCGTGCAAGTACACCGGCAAGTTCAGCGCCCATTACCGCAAGCTGCCCTGGGCGCGGGTGATCAGCTCCGGCTACATGG TCAGCGAGCGCCTGCGTCAGGAAGGTTTCGACGCAGTCTTCGTGCCCAAGGGCTACGACGAGCAGTTGCTGGCCGACCAGGGGCGTGAGCGCGACATCGA
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Amino Acid Sequence |
>GlcNAc-PI de-N-acetylase
MSRKQQLLKRHRRNKRLGLLAGLVALVAIGAFSWWWLPLLLLPLLWAAHEAWFADHLFYAPGEDYAYDFGEQTREAPASLSGGLLKAECVLQGNETLVLE LRVKSSWLGRFLDPQVELVAGEQADRQTFERGVDGVRFLNLTGLAAPLQAGALRLRGRHCRLAGQPRLWITPAVELQRRRVMVIAPHADDAELAAYGLYS QADEAWVVTLTAGEIEAEHYQQMGLAKAEAARLKGRLRAWDSVAVPRWAGVAESRCVQLGYFCLQLPAMQAAPDQPAASREADLADIRVFRRFNPFPLPA DGDGAPTWRNLLADLRALLEMARPEVLVMPHPQLDPHPDHICAQAAVLEALQGLAWQPQTLLCYANHLHDNDRWPMGDSGDGVALPPQQDAVQAWAPCSL VLDLATQRDKAMALGMMHDLQPPAPFKRRLRRLLQRWLAGRRSSPYGENEFFRKAVRRHELFWRREL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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