Pseudomonas sp. C5pp, RR51_RS01455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCATACTCGCCGCCACCAACCTCAACCTCGAAGAGATGGTGCGTGAGAGCCGTTTCCGCGAAGACCTGCTGTATCGCCTGAACGTCATCACTTTGCACC TGCCGCCGCTGCGCGAGCGCAGTGAAGACATCCTGACCTTGGCCGACCGCTTTCTCGCCCGCTTCGTCAAGGAATACTCTCGGCCTGCGCGCGGCTTCAG TGACGAAGCCCGCACAGCCCTGCTCAACTACCGCTGGCCCGGCAACATTCGCGAACTGCGTAACGTGGTGGAGCGGGCCAGTATCATCTGCCCACAGGAA CGCGTGGAAATCAGCCACCTGGGCATGGGCGAGCAGCCTGCTGGTAACGCCCCTCGCATAGGCGCCGCACTGAGCCTTGATGAGCTGGAGCGCGCCCACA TTGGCGCGGTGCTGGCCGCCAGTGACACCCTTGACCAGGCCGCCAAGACCCTGGGGATCGACGCATCCACCCTGTACCGCAAGCGCAAGCAGTACAACCT
|
|
| DNA Sequence for Gene |
>RR51_RS01455
ATGAAATGGCCGCCCATGAAGCTGCGCACGCGGCTTTTCCTCAGCATTTCGGCGCTGGTCACCGTGGCCCTGCTCGGGCTGCTGCTGGGCCTGGTCAGCG TGCTGCAGATGGCCACGGTGCAGCAGCGACTGGTGCGCGATACCACCCACACCTTGGAAATAGGGCTGAAGTTGCGCCAGAACCTTGGCGAACAGTTGAC CCTGATCCTCGATGACGAGACCGCTCCGGAAAATCTGCGGCTGCTGCAAGACAACTTCCAGACCCTGCTGAACCAAGGGCTGGACCAAGGTGGCGAGCGC ACCGGCTTCAGCAAGGCCAGCAGCAACTATCAGGCCTTCCTCCAGGCCTACCGCGCCAGCCCGGCGCCCTCCCGCAGCATGGGCGTTGACCAACCACTCG GGGCCGCGTTCAACCAGGTCCGCACCGATCTGATCGATTCCCACAAGCAGGCCCTGGAGCACATCACCCGCAGCGAGGAGCACACCCGCGACCACGCCCT GCTGGTCAGCGGCGTACTCGGCCTGATGGGTTTGGTGGTACTGGTACTGGGCTTCATCACCGCGCACAACATCGCCCGGCGCTTCGGCCAGCCGATCGAA GCATTGGCCAAAGCGGCCGACCAACTCGGCAAGGGCGATTTCGACGTCACCCTGCCGGTCACACAGGCCACCGAACTGAACCAGCTCACCCGCCGCTTCG GCCTGATGGCCGATGCCTTGCGCAAGCACCAGGCCACCAACGTCGATGAACTGCTGGCTGGCCAGCAACGCTTGCAGGCCGTGCTGGACAGCATCGACGA TGGCCTGCTGATAATCGATCGCCAGGGCCGCCTGGAACACCTCAATCCGGTGGCGCAGCGCCAGCTGGGCTGGACCGACAGCCGCGCCGGCAGTAGCCTG GCCGAAGCCCTGCAGCGCCCGGAACTGGAACAGCAGCTACGCCAGGTACTGCGCGGCGGCAACCTCGACCGCCAGCCAGACGACCTGAACATGGACGTCG ATGACGAAACGCGCCTGCTCGCCTACAGTCTGACCCCGGTCAGCCACCCGCAAGGGCCGATACTTGGCGCAGTGATGGTGTTGCATGATGTAACCGAGCA GCGCGCCTTCGAACGCGTGCGCAGCGAGTTCGTGCTGCGCGCTTCCCACGAGCTGCGCACTCCGGTGACTGGCATGCACATGGCCTTCGGTCTGTTGCGC GAGCGGCTCAAGTTCCCGCCAGAGGCGCGCGAGCATGACCTGCTGGAGACCATTGGCGAGGAAATGCAGCGCCTGACCCAGTTGATCAACGACCTGCTCA ACTTCAGCCGCTACCAGAGCGGGATGCAGAAGCTCGAGCTGGCTCCCTGCGCCATAGACGAACTGCTGGAACGTGCACAACATCGCTTTGCCGAGCCGGC GGCGAACAAGCAGATCGAGTTGATCACGGAGCTGGAGCCGCCGCTACCGCGCATCCAGGCCGATGTCGCCCAACTCGACCGGGTGCTGGACAACCTGTTG CACAATGCCATCCGCCATACCGCCAGCGGCGGTCGCATCCGCCTGCATGCACGACGGCATGCGGAGCGGGTGATCATCAGTGTCGAGGACAACGGCGAAG GCATTGCCTATGGGCAACAGGGGCGCATCTTCGAGCCCTTCGTGCAGGTAGGGCGCAAGAAAGGCGGCGCGGGGCTGGGGTTGGCGCTGTGCAAAGAGAT CGTGCAGCTGCATGGCGGGCGCATGGGCGTGTTTTCCCGACCGGGGCAGGGAACCCAGTTCTACATGGCACTACCGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATGTACCCTGCCCCCGGCCCCATCTTCGGTGCCGGATCAGTCAATGCTCAACCCGCCGCGGCAGCCGACCTCGTGTCACCAGTTCGGCAAACTGCCGGGC ATTCAGTGGCCGGGCAAAAAGCCAGCCCTGGCCATAATTGACCCCTTCGCTGTTCAGCAGCACCGCTTGGTCTTCACACTCGATTCCTTCGGCAATCACC CGCAGGTGCAGATCGTGGGCCATGCGAATGATATGCGGGGCAACACCGCTACTGGCGGCGTCGTGCCCCAAGGCATCGATAAACGCCTTGTCGATCTTCA GGCAGTCCACTGGCAGGGTTTGCAGGTACGCCAGGCTGCAATAGCCAGTCCCAAAATCGTCGATCAGCACTTGATGCCCCACTGCGCGCAGCGCCTGGAG GTTGTCGCGGGCCACAACCACGTCGATCAGGCCGCGCTCGGTCACCTCGAAGGCGATCTGGCTGGCCGACACACGGTGCAAGGCCAGCAAGCGTGCCGCC
|
|
| Amino Acid Sequence |
>histidine kinase
MKWPPMKLRTRLFLSISALVTVALLGLLLGLVSVLQMATVQQRLVRDTTHTLEIGLKLRQNLGEQLTLILDDETAPENLRLLQDNFQTLLNQGLDQGGER TGFSKASSNYQAFLQAYRASPAPSRSMGVDQPLGAAFNQVRTDLIDSHKQALEHITRSEEHTRDHALLVSGVLGLMGLVVLVLGFITAHNIARRFGQPIE ALAKAADQLGKGDFDVTLPVTQATELNQLTRRFGLMADALRKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWTDSRAGSSL AEALQRPELEQQLRQVLRGGNLDRQPDDLNMDVDDETRLLAYSLTPVSHPQGPILGAVMVLHDVTEQRAFERVRSEFVLRASHELRTPVTGMHMAFGLLR ERLKFPPEAREHDLLETIGEEMQRLTQLINDLLNFSRYQSGMQKLELAPCAIDELLERAQHRFAEPAANKQIELITELEPPLPRIQADVAQLDRVLDNLL HNAIRHTASGGRIRLHARRHAERVIISVEDNGEGIAYGQQGRIFEPFVQVGRKKGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQFYMALPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|