Pseudomonas sp. C5pp, RR51_RS00555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. C5pp Contig01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAGGACAATGCGGTCCCTGTGGGAGCGGCTTCAGCCGCGAAGAAGGCAACACAGGGCTTGAAGGTAACCACCCGACAAAACAGCGCTTCCCTATTGGCT GGTGATTTTTTAAACTATCGAGTCCGCCTGCCCATTATCGGGCTGCACGCCCACCGCAATTGCTACTGAGGAAGACCATGGCCCGCGTAACTGTTGAAGA CTGCCTGGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCGACCAAGCGCGCTCGCCAGCTGGCGACCGGCGGCAAAGAGCCACGCGTTGCGTGG GAAAACGACAAGCCGACCGTTGTTGCCCTGCGTGAAATCGCCGAAGGCATCGTCACCAACGAGTTCATCGCCGCTGAAGAGATCGTCACCGAGGATCCGG TGTTCGCCGCGTTCGAGGACGAGAACAACGAGGCTGTCTGATTGATGCCAGGTCGACGTCGCACGGCGCAAGGCCCCCTTCCTCGGCAGGAGGTGAACCC
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| DNA Sequence for Gene |
>RR51_RS00555
ATGCCGGGTATAGAAGCCTTGGCCGAACGGCTGTCGACCTACCTTGGCCCCGAACAGGTCAACCTGGTCCGGCGTGCCTATTTCTACGCCGAACAGGCCC ACGATGGGCAGCGCCGCCGCAGTGGCGAGCCCTACGTGACCCACCCGCTGGCCGTGGCCAGCATCCTCGCGGACATGCACATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCACGACGTGATCGAAGATACCGGCATCGCCAAGGAAGCCCTCAGCCAGCAGTTTGGCGAGACCGTGGCCGAACTGGTCGATGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCGCAAGCCGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGATATCCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAGGAAACCCTCGAGATCTACGC CCCCATTGCCAACCGCCTGGGCATGCACACCGTGCGCGTTGAGTTCGAGGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCGTCGCTGATCCACCGC GCGGTAAAAAGCGCACGCGGCAACCGCAAGGAGATCGTCGCCAAGATCGAGCATTCGCTGGCCAACTGCCTGGCCGCCGACGGCATCGAGGGCGAGGTCA GCGGCCGGCAGAAACACCTCTATGGCATCTACAAGAAGATGCGTGGCAAGCGCCGCGCCTTCAACGAGATCATGGACGTGTACGCCTTCCGCATCGTCGT GGACAAGGTCGATACCTGCTACCGCGTACTCGGTGCGGTGCACAACCTGTACAAGCCGCTGCCCGGTCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTACCAGTCGTTGCACACCACGCTGTTTGGCATGCACGGCGTGCCCATCGAAATCCAGATCCGCACCCGCGAGATGGAAGAGATGGCCAACAACG GCATTGCCGCGCACTGGCTGTACAAGTCCAACGACGACGAGCAACCCAAGGGCAGCCACGCCCGCGCCCGCCAGTGGGTCAAGGGCATCCTCGAGCTGCA GCAACGTGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTTTTCACGCCCAAAGGCCGCATCATGGAA CTGCCCAAAGGCTCCACGGCCGTCGACTTCGCCTACGCGGTGCACACCGACGTCGGCAACAGCTGCATCGCCTGCCGCATCAACCGCCGCCTGGCGCCGC TGTCCGAACCGCTGCAAAGCGGCTCGACGGTGGAAATCGTCAGCGCCCCGGGCGCGCGGCCGAACCCGGCCTGGCTCAACTTCGTGGTTACCGGCAAGGC GCGCACGCACATCCGCCACGCGCTCAAGCAGCAGCGTCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAGGTGCTCACCGGCTTCGACAGC AGCCTGGAAATGATCCCCCAGGAGCGCATCCAGGCCATTCTCGCCGAGTACCGCCTGGAGCTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCGGCCGAAGGCGAGCAGCTGCCGGCACCGGAAGGTCCGCTGGCGATTCGTGGTACCGAAGGGCTGGT GCTGAGCTACGCCAAGTGCTGCACACCGATCCCGGGCGACCCGATCGTCGGCCACCTGTCAGCCGGCAAGGGCATGGTCGTGCACCTGGAAAACTGCCGC AACATCAGTGAAATCCGCCACAACCCGGAAAAGTGCGTACAACTCTCCTGGGCCAAGGACATCACCGGTGAGTTCAATGTCGAGTTGCGTGTCGAACTGG AGCACCAGCGCGGCCTGATTGCCCTGCTGGCCAGCAGTGTCAACGCCGCCGACGGCAACATCGAGAAGATCAGCATGGACGAACGCGACGGCCGTATCAG CGTGGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCGCGTGTGATCAAGAAGCTGCGTACCCTGACCGGTGTGGTCCGCATCACCCGCATG CGTACGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCAACCGCAAGGAGTCATCATGAGCAAGACCGTCATCAACAGCGACAAGGCCCCTGCCGCCATCGGCACCTACTCGCAGGCGATCAAGGCCGGCAA CACCGTGTACATGTCGGGCCAGATCCCGCTGGACCCGAAGACCATGGAGCTGGTCGAAGGCTTCGAAGCCCAGACCGTACAGGTGTTCGAGAACCTCAAG GCCGTGGCTGAAGCCGCTGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGGTGATGG GCCGCTACTTCGAGCAGCCTTACCCGGCCCGCGCCGCCATCGGTGTTGCCGCGCTGCCGAAAGGCGCCCAGGTCGAAATGGACGCCATTCTGGTCATCGA ATGATGCCCTCGGTGACGGGCACCCCGCCCGTCACCTTCCCTCCTTTGCAAGGTTATCCCCTCATGCGTCAAGCACTGCCCCTCGCGCTGGCAGCCCTGC
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPGIEALAERLSTYLGPEQVNLVRRAYFYAEQAHDGQRRRSGEPYVTHPLAVASILADMHMDHQSLMAAMLHDVIEDTGIAKEALSQQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHTVRVEFEDLGFKAMHPMRSSLIHR AVKSARGNRKEIVAKIEHSLANCLAADGIEGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIVVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNDDEQPKGSHARARQWVKGILELQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKQQRRSESISLGERLLNKVLTGFDS SLEMIPQERIQAILAEYRLELIEDLLEDIGLGNRMAYVVARRLLSAEGEQLPAPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCVQLSWAKDITGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRTLTGVVRITRM RT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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