Pseudomonas sp. ARP3, ABX75_RS09040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ARP3 contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCGATCTGCCGCTGTTCATGAGCGTGGGCAATGGCAAGACCGACTTCACCCTGGCCGACAGCGCCCCGGTGCTGGCCGTGCGCTGCGTAGCCGGCCCGA GCCGCCCGCGCGCCAGCCATGCCCATGACGCCAAGGCTTGGCGCCTGATCAGCCAGCTGTCGCTCAATTACCTGTCCCTGAGCGAACAGGGCCAGGGCGC CGGCGCCTTGCGCGAGCTGCTGCGGCTGTATGGCGACAGCAACGATGCCGCGCTGCAATTGCAGATCGAGGGCTTGCGCGAAGTCTGCAGTAAAGCCGTG ACCCGGCGCCTGCCGATGCCCGGCCCGATCGTGTTTGGCCGGGGCCTGGAAATCACCCTGGAATTCGATGAAAACGCGTTTCGCGGCACCGGCGTGTTCC TGCTCGGTGCGGTGTTGGAACGCTTCCTGGCACGCTACGTGTCGATCAACAGCTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
DNA Sequence for Gene
>ABX75_RS09040
ATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGAGTACCCTGGAAGCGATGCACCAGGAGCCCTGGGAATACGATTTCTTCCAGGCCCTGCGGCGCA TCGAATGCGAGTCGCCGCAGCTGCCGCGCCTGGGCCATTCCCTGCGCCTGGCGGACGACCCGTTGCGCCTCGGGCAACAGGCCGACTGCACGTTCGCCCC GGCCACCCTGGCGTCGCTGGAGCCTGGCGGTGACGGCCGGCCGGCGCGGCTGGAGCAATTCTTCTTCGGCCTGGGCGGCCCCAACGGCCCGCTGCCGTTG CACATCACCGAATACGTGCGCGAGCGTCAACGCAACAACGCCGACAGCACCAGCAAACAGTTTCTGGACGTGTTCCACCATCGTCTGCTCAGCCTGTTCT ACCGAGCCTGGGCCGAGGCGCGGCCGACGGTCAGCCACGACCGCCCCGACGATGACTACTGGTCCGCGCGCCTCGCCGCGTTGAGCGGTCGCGGCATGCC GAGCCTGCTCAACCAGGGGCTGATTCCCGACACGGCCAAGCTGCATTACAGCGGCCACCTGTCGGCACAGACCCGCTATCCGGACGGTCTCAAAGCCATC CTCAGCGAGTACTTCGGCCTGCCGGTAGAGATCGAGGAATACGTCGGCCAATGGCTCGAACTGCCCGAACGCAGCCGCGTGGGCGTCAACGCCAACCGGC TGGGCGTGGACCTGTGCCTGGGCAGCCATGTGTGGGACCGCCAGCATAAATTCCGTATCCGCCTGGGCCCGCTCACGCTCGATGACTACATGGGCATGCT GCCCGGCCACCAGCCGTTCAACGAACTGGTGGCGTGGGTAGCCGAGTATCTGGGCCACGAATTGGACTGGGACTTGAACCTGGTCCTGCAACAACCCGAA GTACCGGCGCTGCGGCTTAACGGCCAGTTTCGCCTGGGCTTCAACACGTGGCTCGGCCAACCTGCGCACGACGCCAACGACCTAATCCTGGCCCGGCATT ACGCCGATCAAGCCACCACCTCAAGGAATCCAGAGCATGGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATCAGTCGCGCCGCACTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAGTTGCGGGGCAATCCTTACGTG GAACTGGCCCACTGGTTCCACCAGTTGCTGCAACTGCAGGACTCGGACCTGCACCGCATCATCCGCCAGTTCAACGTCGAGCCGGCGCGCCTGGCCCGCG ACCTGACCGAAGCCTTGGACCGTCTGCCGCGCGGCTCGACTTCCATCACCGACCTGTCGTCCCACGTAGAAGAAGCAGTGGAACGTGGCTGGGTCTACGG CAGCCTGATGTTCGGCGAAAGCCAAGTGCGCACCGGTTACCTGGTGCTGGGCATTCTCAAGACTCCGAGCCTGCGCCATGCGTTGTTAGGCTTGTCCGGC GAGTTCGACAAGATCAAGGCCGAGGCCCTGAGCGAGCGTTTTGACGAATACGTCGGCGACTCGCCGGAAAACGCCTTGACCGCCAGCGACGGTTTCAACG
Amino Acid Sequence
>type VI secretion protein
MESQARTSSDPVSTLEAMHQEPWEYDFFQALRRIECESPQLPRLGHSLRLADDPLRLGQQADCTFAPATLASLEPGGDGRPARLEQFFFGLGGPNGPLPL HITEYVRERQRNNADSTSKQFLDVFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAALSGRGMPSLLNQGLIPDTAKLHYSGHLSAQTRYPDGLKAI LSEYFGLPVEIEEYVGQWLELPERSRVGVNANRLGVDLCLGSHVWDRQHKFRIRLGPLTLDDYMGMLPGHQPFNELVAWVAEYLGHELDWDLNLVLQQPE VPALRLNGQFRLGFNTWLGQPAHDANDLILARHYADQATTSRNPEHG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site