Pseudomonas sp. ARP3, ABX75_RS09010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ARP3 contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TATCCGAGCTGCGGCCGATCGCCATCGAGCCCTGATTCATGGACTTTTCGGGACATTGCCCGGGGGTAATCTTGTGATAACTAGTGATAGTCAAACACAG CGACATCTTGCCTCCTTGCTGATACTTCGCGCGCGGTCGATTCCCGGGCCGAACATTCCCGGGAAATCCCCATCGGGTCGTGCAATCGACCCTTCACAAC CCGCAGTTGCCAGCATGATCGCTGATCTTAACTGGGCCGCATGACAAAAATCCTGCCTCGGTACGTGCTTCGACCCGTCAGTCGCACAGGTTGTTAAGCA CCGCACATCTGTCACAGAGGGCGAATAGCTTACCTTGACAAGGCATAAGTACTACACCAAAAATGCACAACTTCTTGAACACCAATGATGGCACATTAAT ACCATCGTGCTTATATGACCAAGAAAACATGCAAAGTTCCTCGCGCAACTAATGCATGAATTGCCCGGCATTTAACGGGCCGATAGGGAGATCGATTTCA
DNA Sequence for Gene
>ABX75_RS09010
GTGGATGTGCCTTTGCTGCTCGCCGCCGTTTCCGCGAACTCGCCATGTGGCGAAGACATGGAATATGACGCGGATTTTCTCCAGCTAGAGCGTGATGCCA AGGGCCAACCCGAGCGCAGCATGGGCGACGCTATTCTGCCCGCCGAACCGCCGGAATGGCGCAGCATCCAGCAGCAGAGCCTCGACTTGCTGCAGCGCAG CAAAGACCTGCGCATCACCCATTTTCTATTGCAAAGCTCCCTGGCCCTGCAGGGCGTGGCCGGTCTGGCTGAAGTCCTCACGCTGATCGACGCACTGCTG CGCGAATACTGGGCCGACCTGCACCCGCGTCTGGACGCCGACGACGATAACGACCCCACCGTGCGCATCAATGCACTGGCCGGCCTGACCAGCGACGCGA CCATCCGCCTACTGCGCGAAAGCATCCTGACGCGCTCGCGCACCTTCGGCCCCGTGAGCCTGCGCGCCGCGCTCAATGCCAGCGGCCTGATGCACTTTCC GGATGAACAACTGGGCGCCCAGCAGCTCAACGCGGCGTTTCTCGACAGCGACCCCGACCATCTGCAAGCCACCCGCGACGCCTTGAGCACCGCGCGAGCG GCCTGCGAAGCCATTGAACAGCAGGTCAACGAACAAGTCGGTTCCGCCCAGGGCGTGGACCTGAGCGCATTGAAGCAGCCACTCAAGCAAGCGCTGCAAG TCCTCAATCAGGCGGTACCCGGTACCGACAGCAGCAGCGAACCCGAGGCCGTCAGTGAAGACAGTGCCCCCTCGGTCGACTTCGCCCCTGCCCCAGCGGC GCCACGCCCGGTTGGCGATATCGCCAGCCGCGACGACGTGCTGCGCAGCCTCGACAAAATCCTTGCGTATTACACCCGGCACGAGCCTTCGAGCCCGCTG CCGGTGTTGTTGAACCGGGCCAAAAATCTGGTCCATGCCGATTTCGAAGCGATCGTGCGCAACCTGATCCCCGACGGCATGTCCCAATTTGAAAACCTGC GCGGCCCGGACGGCGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGCCCGGCTGTGCAGTAACAACACCGTCGCTCAAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGC CTCGAGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTGATGGGTGTGATGGCCGACCTCGCCGGCAAGCC TGCCGAGCCGCTGGCGCCCGTGGCCGACCGCAAGTTCCTTGAAGTGGATGTCGACAACTTCGACTCGCGCCTCAAGGCCATGCAGCCGCGCGTGGCATTC CATGTGCCGAACGAACTGACCGGCGAAGGCAACCTGAGCCTGGACATGACCTTCGAAAGCATGGACGACTTCAGCCCGGCCGCCGTGGCCCGCAAAGTCG ACGCGCTGAACCAGTTGCTCGAAGCCCGCACCCAGCTGGCCAATCTGCTGACCTACATGGACGGCAAGACCGGCGCTGAAGAAATCATCATGAAGGCAAT
Amino Acid Sequence
>type VI secretion protein ImpA
MDVPLLLAAVSANSPCGEDMEYDADFLQLERDAKGQPERSMGDAILPAEPPEWRSIQQQSLDLLQRSKDLRITHFLLQSSLALQGVAGLAEVLTLIDALL REYWADLHPRLDADDDNDPTVRINALAGLTSDATIRLLRESILTRSRTFGPVSLRAALNASGLMHFPDEQLGAQQLNAAFLDSDPDHLQATRDALSTARA ACEAIEQQVNEQVGSAQGVDLSALKQPLKQALQVLNQAVPGTDSSSEPEAVSEDSAPSVDFAPAPAAPRPVGDIASRDDVLRSLDKILAYYTRHEPSSPL PVLLNRAKNLVHADFEAIVRNLIPDGMSQFENLRGPDGE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site