Pseudomonas sp. ARP3, ABX75_RS09000

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ARP3 contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGCGCCCGGGCCAGCCTCAAGGGCGAGTTCCGCATGCAGCAGACCATGATCCAGCCGGCTGAAAACAATCCGTTGAAATTCGCACCGAATGCCGATGAAG CGTTACTGCTGTTGCTGCGTCACGGCAACCAAGCGTTTATGGCGCCGGATGTCGCCGTGCGGGAAAGTTTCGACGACCTGCGCGCCCACCAGTTGGCGGT GATGGCGGGTGTGGAAGCGGCGATCAAACACCTGCTCAAGCGCTTCGAACCGGCGCAACTCGAAGAGCGCATGGGCAAGCCCGGCGGGCTCTCGGGTATT TTCAGCGGTTCGCGCCAGGCCCAGTACTGGCAGCAGTTCACCGAGCTTTACAGCAATATTTCCCGTGAGGCCCAGGAGGATTTCCAGGACCTGTTCGGCC GCGAATTCAGCCGGGCCTACGAAGAACACAGCGCCCGACAGCGGCGCTGACCGCCACACACGGATTAACGGATAGCTAAGTACGTCATTGAGGACGCAGG
DNA Sequence for Gene
>ABX75_RS09000
ATGATTCCCAGGTTTTTACTCGCAGTCGCCACCGCGCTGCTGCTGACGGCGTGTGCCAAAGATGCCGCCAAACCCGACACCGCCGCCGAGGCTGACGCCG ATACCGCGGCGGTCGAGCTGCACTTCCATGCGATTGCCGGGCTCAACCCCAGCGCCAATGGCCAGGCCGCGCCGGTACGGGTGCGGATTTTCGAACTGAA GAACGCCGCCACCTTTGCCCGTTCCGACTATTTCTCCCTGGCCGACCGCGCGCAATCGACCCTGGGCCTGGACCTGCTGGACCAGGATGAAGTGACGGTC CAGCCCGGCCAGCAGTTGAGCATTCAGCGCGACCTCGACCCGTCCACGCGCCAGATCGGTTTGCTGGTGGGCTACCGCGAACTCGACCGCGCGCAGTGGC GCACGGTGATCAACGTGCCGGCGCGTCAGTACACCGAATACCAGATCAGCCTCGATGTGCGTGCGGTGCGCGCCGACGTCGTGGTTACCCCATCCAGCCC TGCCCAATAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAATCGGAGCCCCCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATCGGAACGCAGCACTTCCAGCAGCATGACCGTTACCTGGAAA ACCTGATCGACGCCCGCAGCCGCCCGTTGTCCGCCGGTGCCTGGGGCTTTTCCGAGTTGCTGATCGACCAGGGCCTGTTGGCCCAGGGCAAGCTGGCCAT CGTCACGGCGCGGGGCCTGTTGCCGGATGGCACGCCGTTCAATATCCCTCAGGACGACCTGGCGCCTAGCCCGCTGAACATCGATGACAGCCTGCGTGAC GGTCTGGTGTACCTGGCCCTGCCGCTCAAGCGTGCCGGCGTGCGCGACACCGTCGACGAAGGCGAGGCCCTGGAAGCCGCGCGTTACGTGAGCCAAGTGC GTGAAGTGCGCGACGACAACGCGCCGTTCGAAAACCGCGCGCCGGTGGCCGTCGGCTCCCGCGCTTTGCGCCTGTTGACCGCCCAGGATGGCATCAGTGA
Amino Acid Sequence
>type VI secretion protein
MIPRFLLAVATALLLTACAKDAAKPDTAAEADADTAAVELHFHAIAGLNPSANGQAAPVRVRIFELKNAATFARSDYFSLADRAQSTLGLDLLDQDEVTV QPGQQLSIQRDLDPSTRQIGLLVGYRELDRAQWRTVINVPARQYTEYQISLDVRAVRADVVVTPSSPAQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site