Pseudomonas sp. ARP3, ABX75_RS08895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ARP3 contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGGCTGATTGACGCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGCAGCGGTTTGACGAGGTTCCGCGAAAAATCAGCGCTTCCCTAAACG CTGGTGATTTTTTAAACTGCTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATCTTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAATTGGCCACTGGCGGCAAAGAGCCTCTGGTCCAGTGGG AAAACGACAAGCCGACCGTTGTCGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCCGAAATCGTTGAAGACGAACCGCT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCAAAACCATCGGCAGGAGTTCACACT
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| DNA Sequence for Gene |
>ABX75_RS08895
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGGCCTACCTCGGCCCAGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGCAGTGGCGAGGCGTACGTCACCCATCCTCTTGCGGTGGCTAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCGATGCTGCATGACGTGATCGAAGACACCGGAATCGCCAAGGAAGCTCTCAGCTCCCAATTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAATTTCGAGACCAAGGCCGAAGCCCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGATATCCGCGTGATCC TGGTCAAACTGGCCGACCGGCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAGGAAACCTTGGAAATCTATGC GCCCATCGCCAACCGGCTGGGCATGCACGCCATTCGCATCGAATTCGAAGACCTCGGCTTCAAGGCGATGCATCCCATGCGCTCGGCGCGCATCTACCAG GCAGTCAAGCGTGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCGCTGAGCCATTGCCTGGCCATCGACGAAATCGAAGGCGAGGTCA GTGGCCGGCAGAAGCACATCTACGGCATCTATAAAAAGATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTGTATGCGTTCCGGATCATCGT CGACAAGGTCGACACTTGCTACCGCGTGCTCGGCGCTGTGCATAATCTGTACAAACCCCTGCCCGGCCGCTTCAAGGACTACATCGCCATCCCCAAGGCC AACGGCTATCAGTCGCTGCATACCACGCTGTTCGGGATGCATGGCGTGCCGATCGAGATCCAGATCCGCACCCGTGAAATGGAAGAAATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGTGGCGACGAGCAGCCCAAAGGCACCCATGCCCGCGCCCGCCAATGGGTCAAAGGCGTGCTGGAAATGCA GCAACGCGCGGGCAACTCCCTCGAATTTATCGAAAGCGTGAAAATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAGGGGCGGATCATGGAG CTGCCCAAGGGCTCCACGGCGGTCGACTTTGCCTATGCGGTACACACCGACGTAGGCAACAGCTGCATCGCCTGCCGCATCAACCGGCGCCTGGCGCCAC TGTCGGAGCCGCTGCAAAGCGGTTCCACCGTGGAGATCGTCAGCGCACCGGGCGCACGACCGAACCCGGCCTGGCTCAATTTCGTGGTCACCGGCAAGGC CCGCACACACATTCGCCACGCCCTGAAACTGCAGCGCCGTTCCGAGTCCGTCAGCCTGGGCGAGCGCCTGCTGAACAAGGTACTCAACGGTTTCGACAGC GCCCTGGACAAGATTCCCCAAGAACGCGTGCAGGCGATGCTTCACGAATATCGCCAGGAAACCATCGAAGACCTGCTGGAAGATATCGGCCTGGGCAACC GCATGGCCTACGTGGTCGCCCGCCGCCTGCTGGGCGAGGGCGAGCAATTGCCGAGCCCCGAAGGCCCGTTGGCGATTCGCGGCACCGAGGGCCTGGTGCT CAGCTACGCCAAATGCTGCACACCGATCCCGGGCGATCCGATCGTCGGCCACCTGTCCGCGGGCAAAGGCATGGTGGTGCACCTGGACAACTGCCGCAAC ATCTCCGAAATCCGGCACAACCCGGAAAAATGCATCCAGCTTTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGCGTTGAGCTGGAGC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAACATCGAAAAGATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTACACGACCGCGTACACCTGGCCCGCGTGATCAAGAAGCTGCGCGCCTTGACCGGGGTCATCCGCATTACCCGCATGCGT GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCTTCAACCCCGCCACTGCCTATTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAAGCCCCGGCCGCCATCGGTACTTACTCCCAGG CAATCAAGGCAGGCAATACCGTCTACATGTCCGGCCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTGGAAGGCTTCGAAGCCCAGACCGTGCAAGT CTTCGAAAACCTCAAGTCCGTGGCCGAAGCCGCCGGCGGTTCTTTCAAGGACATCGTCAAACTGAACATTTTCCTCACCGACCTGAGCCACTTCGCCAAG GTCAACGAGATCATGGGCAAGTACTTCGAACAGCCGTACCCAGCCCGTGCCGCCATCGGCGTGGCAGCCCTGCCAAAAGGCGCGCAGGTTGAGATGGACG CGATTCTGGTGATCGAGTAAAACACCCGGCGCAGCCCCCACAGGCTGCGCCGACCTCGTTTTAAAAGGATTTCATGATGCGCAAAGCGCTTGTAGCTTCT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSAYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSSQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESVSLGERLLNKVLNGFDS ALDKIPQERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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