Pseudomonas sp. ARP3, ABX75_RS26510

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ARP3 contig33, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAACTGCTCCACGGCACCCTGCTAGCGGTCCAGCGCGGCAGCGTCACGGTGTTTGCCGAGCATGGCCGGCAGACGCCAATGCGCACCCTGGGCGCCGGCG AGCAATGGCTGTTCACCGCCAACGGGCCCCTGCCCATGGCCAACGACGGGCTCGACCCCTGGTCCTGGAGCGACGGCGTTCTGAGCGCCCGACAGATGCG CCTGGGCGCTTTCATCGATGAACTCGCCCGTTATCGACCCGGCGTGTTGCGCTATTCGCCGGCGGTGGCCGACCTACGGGTTTCGGGCACCTATCAGTTG GCCGACACCGACGAAGTCCTTGCCCTGCTGGCCCAGGCGCTGCCCGTACAGGTGCGCTACCGCAGCCGTTACTGGGTCACGCTGGAGGTTGCCAGTTAAT TTCAAAAATAAATGAGGGGGATTCTCATTCCTGTTCGACCTGTAAAGGAAGGCGGAAAACACGCCGCACCTGCCCCACAGACCACGAACGAGATAGCGCA
DNA Sequence for Gene
>ABX75_RS26510
ATGAATCTGTCCCCTCCTCCCCGTACTCATGTGCTGAGCCACGCCATTCGCGGTGTCCTGCTCGGGCTTGCCGTCGCCGGCGGCGCCCTGCCGGCCGTTG CCCTGGCCCAGGACAGCAGCACCCTACAGCACAGCTGGAATATCGGCGCCGGTGATCTGGCCCCGGCCCTTGACCAGTTCGCCCGCCAGGCCGGGGTCAG CCTGTCCTACGATGGGACCACCGTCGCCGGCAAGCGCACCCAGGGCGTCAGTGGAGCACTCGACAGTACCCAGGCGCTGGAACGCTTGCTGCGGGGCAGC GGGATCGAGGCGCAACAGCAATCGAGCAAGGCATTCCTGCTGCTTGCGCGCATCGACACGGGCAGCGCCCTGCAACTGGGCGCGACCAGCGTCTCGGGCG AACAACTGGGCGTGGCCACCGACGGCACCGGTTCCTATACCACCGGTGCGCTGACCATTGGCAAGACCGCCCACTCACTGCGCGAGACGCCGCAGTCGGT CAGCGTGGTGACGCGCCAATTGATGGACGACAAAAACCTCACCACCCTCGACCGGGTCATGGACCAGGCCACCGGTATCACCCGCTCGAACCGCAACTTC GGCTCGAACCGCTTCAACTCCCGGGGTTTCACCCTGGAAGACGACAGCTACATGCTCGATGGCGTCCCAGGCTCGGCCTATGACCCGACCGGCTGGCTGC CGGTGGATATGGCGGTCTTCGACCGCGTGGAAATCCTGCGCGGCGCCGCTGGCCTGCTGGTCGGCGCCGGCAACCCCGGCGGCGCGGTGAACCTGGTGCG CAAGCGCCCCGGGGCGGTGCCGCATTTCTCGGTGGCGGCCCACGCCGGTTCCTGGGACACCTATCGTCTCGATCTCGATGGCAGCAGCCCGCTCAATGAC AGCGGCACCCTGCGCGGCCGTGCCGTGGTCGCCTATGAAGACCGTGGCTACTTCCAGGACGTGACCCAGACCCGCACGCCGCTGCTCTACGGGATCGTCG AGGCCGACCTGAACGACGCCACCACCCTGGCCGTCGGCCTGCGCCGCCAGACCATGGACACCCGGGGCTACTCGATCTTCGGCCTGCCGCGCTACAGCAA TGGCAATGCCCTGGATGTACCGCGCTCGACCTCGCTGGTGCAGGACTGGAACCGCCATGAAACCGAAGTGACCGAGGTCTTCAGCGACCTGGAACACCAC TTCAACGACGACTGGACCGGCAAGCTGTCGCTGATGCGCAGCGAAGGCGGCTTCGACCAGAAGGCCGCCTATGTGCGCGGCGCCGTCGACCCCGACACGC TGACCGGCCCCCGCCTGCAGGGCGTGCAGTTTCGCAGCTATGACATCGAAAACACGGCGGCCGACGCCCACCTTTCCGGCAACTTCTCAGCCTTTGGCCT GAGCCACGAACTGATGCTGGGGGCCAACTGGTCGCAGGTGGATATCGATGCCAGAACGGCGGACATGTCGGTCGGCCTGCCGTTCGATGTGTTCAACCCC AACCACCACCAGATCCCCGAACCGGCTCGCCCGCAATGGAGCGAGTTGCGCGACCAGACCACGCGCCAGTACGGCCTCTACAGCACCCTGCGCCTGCGCC TGGCCGAACCGCTGAGCCTGGTGATCGGCGGGCGGCTGAGCTGGTACAAGGACGATATTCAAACCAATACCGCGCCGCGCTCCGTGGCCCGCCAGGACCA TGAGTTCACCCCGTTCGCCGGGCTGATCTACGACCTCGATCCCCACTGGTCGGTGTATGCCAGCTATGCCGATATCTTTCGCCCGCAAAGCGACAAGTTC AACGCCGGTGGCAAGGCACTGGAACCCACCGTCGGCTCGAACTACGAGACCGGGGTCAAGGGCGAGTTCTATGACGGGCGCCTGAACCTCTCGGCCGCGC TGTTCTACGTCAAGCAGCAAGACCTGGCCATGGAAGACGGCGACAACACCGATTTCACCGTCTGCTCGCGCTACAACACCGACGGTATCTGCTACGTCAA TGGCACGCCGCGCACCAGCAAGGGCGTGGAGCTGGAAGCCAGTGGCGAAGTGCTGCCGGGCTGGCAGGTCATGGCCGGCTATACCTACAACACCCGCAAG GACGATGAAGGCCAGGTCTTCGATGCCGAGTCGCCCAAGCATATCGCCCGGGTCTCGAGCAACTATGACTTCCAGGGCGACCTCAAGCGCCTGAGCATTG GTGGCGGTGTCTCGGCCCAGAGCGGTTATGCCTCGGACTACGGCGTGATCGTGGCCAACCCCGGGCGCGCGGTCTGGGATGCGCGCACGGCCTGGCAACT GGATGAACACTGGAAGGTCGCGCTGGACTTGAAGAACGTCCTGGACCGCAAGTACTACGAAGCCACGGGCGAGGTTCGCCGTGGCAGTTACTACGGTGCA CCGCGCAGTTACATGCTGACCCTGCGCGGCGACTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCGAACGCCGCGGTGTCAGCCTCCGGCCTGTTTGAGCAACGGGTCGGGAGCGGGCGATACCAGGGCGGCAATACTGATTTCGCGCATGCGAAATTTCTGC ACCTTGCCGGTGACCGTCATCGGGAACTCGTCGACGAAAGTAAAGTGGCGCGGCACCTTGAAATGGGCAATGCGCTGCTTGCACCAGGCCTTGAGTTCGT CAGTCTCGGCGTGATGACCGGGGTGCAGCTTGATCCAGGCGACGATTTCCTCGCCGTACTTCTCGTCGGGAATACCGATCACCTGCACATCGGCCACCGC CGCATGGGTAATCAGGAATTCCTCCAGTTCGCGCGGGTAAATGTTTTCGCCGCCGCGGATAATCATCTCCTTGCTGCGCCCGACAATGCGCACATAGCCC TGCTCATCCATCACCGCCAGATCGCCGGTGTGCATCCAGCCTTCGCTGTCGATGGCCTCCAGGGTCGCCTGGGGATTTTCCCAGTAGCCGAGCATCACGC
Amino Acid Sequence
>ligand-gated channel
MNLSPPPRTHVLSHAIRGVLLGLAVAGGALPAVALAQDSSTLQHSWNIGAGDLAPALDQFARQAGVSLSYDGTTVAGKRTQGVSGALDSTQALERLLRGS GIEAQQQSSKAFLLLARIDTGSALQLGATSVSGEQLGVATDGTGSYTTGALTIGKTAHSLRETPQSVSVVTRQLMDDKNLTTLDRVMDQATGITRSNRNF GSNRFNSRGFTLEDDSYMLDGVPGSAYDPTGWLPVDMAVFDRVEILRGAAGLLVGAGNPGGAVNLVRKRPGAVPHFSVAAHAGSWDTYRLDLDGSSPLND SGTLRGRAVVAYEDRGYFQDVTQTRTPLLYGIVEADLNDATTLAVGLRRQTMDTRGYSIFGLPRYSNGNALDVPRSTSLVQDWNRHETEVTEVFSDLEHH FNDDWTGKLSLMRSEGGFDQKAAYVRGAVDPDTLTGPRLQGVQFRSYDIENTAADAHLSGNFSAFGLSHELMLGANWSQVDIDARTADMSVGLPFDVFNP NHHQIPEPARPQWSELRDQTTRQYGLYSTLRLRLAEPLSLVIGGRLSWYKDDIQTNTAPRSVARQDHEFTPFAGLIYDLDPHWSVYASYADIFRPQSDKF NAGGKALEPTVGSNYETGVKGEFYDGRLNLSAALFYVKQQDLAMEDGDNTDFTVCSRYNTDGICYVNGTPRTSKGVELEASGEVLPGWQVMAGYTYNTRK DDEGQVFDAESPKHIARVSSNYDFQGDLKRLSIGGGVSAQSGYASDYGVIVANPGRAVWDARTAWQLDEHWKVALDLKNVLDRKYYEATGEVRRGSYYGA PRSYMLTLRGDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site