Pseudomonas sp. ARP3, ABX75_RS26220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ARP3 contig32, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACAAATGATGAACGTATGGACTACCTTGATGAGATGCTTAATTTCCTTGAGGTGGAGTTTGCTAAATTAGCAGGAAAGGATGGCCCTGAATCTCAGCC TCCGAAACTAGGCGCACAAGCAGATGATATCAAGGGTCGGGCCATTGGTATGCAGACGAGAATCGCATACCTTAAAGGGCTGTTGGACGTTATAAAGTCC AAGCAACAGTGAATGCTGGCGATACGCATCGTGTAGTGGGCTGTTCCGAAGGAACTGTTCATAAGCAGTTGCTCGGTTAAACGGGGCAACTGCTTTCACT GTTGTTCAGCAATAACACACCCTAAGTAGGGGCACTATAACTGTCCTCACCTAGGGTGTGTTTTTTCAGCAGTTACCTGTATTCGCCGAGGCGCACACGC TAGGTGCAGGCCCCCGCTACTGCGCTGGGCGTCTGCTGTATAAAAGGTGCGATTTCCCGCCCCCTGCGCTAACCTGCCTCGATGTTTTACGAGGTCAACT
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| DNA Sequence for Gene |
>ABX75_RS26220
ATGCACATTCATATTCTCGGTATTTGCGGCACGTTCATGGGCTCGATGGCGGTTCTGGCCAAAGAGCTGGGCCATCATGTCACCGGCTCCGATGCCAATG TTTACCCACCCATGAGCACGCAACTGGAAGCTCAGGGCATTGAGTTGACCCAAGGCTACGACCCGGCGCAATTCGATCCGGTCCCGGACCTGGTCGTGAT CGGCAACGCCATGTCCCGTGGCAACCCGGCGGTCGAGTACGTGCTCAATAAAGGCTTACCTTATGTGTCCGGCCCGCAGTGGCTGGCGGATCATGTGTTG CAAGGTCGCTGGGTATTGGCTGTTGCGGGCACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGTTGGAGCATGCGGGCATGAGCCCGGGCT TCCTGATCGGCGGCGTGCCGCAGAACTTCTCGGTATCGGCGCGTCTGGGCCAGACCCCGTTTTTCGTGATCGAGGCGGATGAATACGACAGCGCTTTCTT CGACAAGCGTTCCAAGTTCGTGCACTACCGCCCGCGCACAGCGATATTGAACAATTTGGAATTCGATCACGCGGATATCTTCCCTGATCTGGCGGCGATC GAACGGCAGTTCCACCATTTGGTGCGCACCATTCCGAGCGAGGGCCTGGTGATCCACCCGACCACCGAACCGGCCCTGCAGCGAGTGATCGACATGGGCT GCTGGACCCCGGTGCAAACCACCGGTGTTGGCGGCCAGTGGCAGGTCAAGTTGCTCAGTGACGACGGCTCGCGATTTGAGGTGCTGTTCGAAGGCGAGGC CCAAGGTGTTGTCGATTGGGACATGACCGGTCAGCACAACGTGGCCAACGCATTGGTGACCCTGGCGGCGGCGCGGCATGTGGGCGTGGTTCCGGCCATG GGCATTGTGGCGTTGAGCGCATTTAAAAGCGTGAAGCGCCGGATGGAAAAAGTCGCCGACGTGAATGGCATTACCATCTACGATGACTTTGCCCACCACC CGACGGCCATCGCCACCACCCTCGACGGCCTGCGCAAACAGGTCGGTGATGCGCCGATCATCGCCATTGTCGAACCGCGCTCCAATTCCATGAAGCTCGG CGCCCACCGCGACGGCTTGCCGGAAAGCGTCAATGATGCCGACCAGGCCGTGTGGTACGCCCCGGCCAACCTCGGCTGGGACCTGCCGGCCATTGCCGCG CAGTGCACAGTGCCTTCGCAAGTGTGCGACTCCATCGAAGGCATCATTGCGTTCGTCAAACAAAAAGCCACGCCGGGCACCCATGTGGTGGTCATGAGCA ACGGCGGTTTCGGCGGCCTGCATGGCAAACTGGCCGAGGCCCTGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGGCCGGAACGCGTCACCCTGGCGATGACCGGCGCATCCGGCGCCCCCTATGGCTTGCGCTTGCTCGATTGCCTGGTGCGCGAGGACCGGGAGGTGCA CTTCTTGATTTCCAAAGCCGCGCAATTGGTGCTGGCCACCGAGACCGATGTGGCGCTGCCCGCCAAGGTGCAATCGATGCAAGCCTTTCTCACCGAGTAC ACCGGTGCGGCGGCGGGGCAGATCAAGGTCTACGGCAAGGAAGATTGGATGTCGCCGGTGGCCTCGGGCTCCGGAGCCCCGGCGGCGATGGTGGTGGTGC CGTGTTCTACCGGCACCTTGTCGGCGATTGCCACAGGCGCCTGCAACAATTTGATCGAGCGCGCGGCGGACGTGACCTTGAAGGAGCGGCGCCAACTGAT CCTGGTGCCGCGCGAGGCGCCGTATTCGAGCATTCACCTGGAGCACATGCTCAAGCTATCGAATATGGGCGTGACGATTTTGCCGGCGTCGCCAGGCTTC
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSMAVLAKELGHHVTGSDANVYPPMSTQLEAQGIELTQGYDPAQFDPVPDLVVIGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFSVSARLGQTPFFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPSEGLVIHPTTEPALQRVIDMGCWTPVQTTGVGGQWQVKLLSDDGSRFEVLFEGEAQGVVDWDMTGQHNVANALVTLAAARHVGVVPAM GIVALSAFKSVKRRMEKVADVNGITIYDDFAHHPTAIATTLDGLRKQVGDAPIIAIVEPRSNSMKLGAHRDGLPESVNDADQAVWYAPANLGWDLPAIAA QCTVPSQVCDSIEGIIAFVKQKATPGTHVVVMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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