Pseudomonas sp. ARP3, ABX75_RS05090

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. ARP3 contig3, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTGGCCGGGTTTGTCGAACGTGCCGTGGCGCAATCGCATATCCGGCTGATCACCGGCGGCAAGGCCGTAGAAGGCAACGGGTTCTTCTTTGAACCGACCG TGCTGGCCGACGCCCAGCAAGACGACGAAATCGTGCGCCGCGAGGTGTTCGGGCCGGTGGTGTCGGTTACCAAATTCTCGGATGAAGCCCAGGTGCTGGG TTGGGCCAACGATTCGGACTACGGCCTTGCGTCATCCGTGTGGACGGCCGACGTAGGACGCGCCCATCGCCTGGCCGCACGCTTGCAATACGGCTGCACC TGGGTGAACACCCATTTCATGCTTGTCAGCGAAATGCCCCACGGCGGTCAGAAACTGTCGGGGTATGGCAAAGACATGTCCATGTATGGGCTGGAGGACT ACACCACGGTCCGGCATGTGATGTTCAAGCATTGATTCGCCGCCCCCCTGCAAGCAGGCGCTTGCAGGGGGGCTAATAACAATAATTTTCAGGATCCCCC
DNA Sequence for Gene
>ABX75_RS05090
ATGGACATCACCCGCCGCGACTTCCTCAACGGCGTCGCCATCACCATTGCTGCCGGCATCACGCCGCTGCAGATTCTCCAGGCCGCCCCCGACGGTCGCT ATTACCCACCCGCCCTCACCGGCCTGCGCGGCAGTCATGTCGGTTCGTTCGAAGTGGCGCATCAGATGGGCTGGGAAAAGAAGGTCTTTGACACCGATAC CTTGCCGATCACCGAGGACTATGACCTGGTGGTGGTCGGCGGTGGCCTGAGCGGTCTGGCGGCGGCGTGGTTCTACCGTGAGAAGCACCCCAAGGCGAAA ATCCTGATCCTGGAAAACCATGACGATTTCGGCGGCCATGCCAAACGCAATGAGTTCCAGGCCGGCGGCCGCATGATCATCGGCTATGGCGGCAGCGAAG CCTTCCAGTCGCCCACCCACCTGTTCAGCGAGCAAGTGAACGGTTTGTTGAAAAAGCTCGGGGTGAATATCAAGCGCTTCGAAACCGCCTTCGACCGCCC GTTCTACCCCAGCCTGGGGCTGTCGCGCGGGGTATTTTTCGACAAGGAAAACTTCGGCGAAGACAAACTGGTGACCGGCGACCCGACGCCGATGGTGGCC GACGATATCGCCCCGGAACAGCTGCATGGGCGCGCCCTGAAAGACTTTATCAATGATTTCCCACTGCCGGCTGCGGACCGCCAGGCGTTGATCGAACTGC ACACTGCGCCCAAGGACTACTTGCCGGGCAAAACGGCCGAGGAAAAGGCCGATTATCTGGCGGCCACCAGCTACCGGGACTTCCTGCTCAAGAACGTGGG GTTGTCGGAAGGTGCGGTGAAATACTTCCAGAGCCGCACCAATGACTTTATGGCCTTGAGCATTGATGCCGTGGCTGCGTCCGACGCTTATAACGTCGGT TTCCCTGGCTTCGCGGGGATGAACCTGACGCCGATCAGTGAAGAAGCTGCGGCAGAAATGGAAGAGCCCTACATCTACCACTTCCCGGACGGCAACGCGT CGCTGGCGCGCCTCTTGGTGCGCAGCCTGATTCCGGGGGTGGCGCCGGGGCACACCATGGACGATATCGTGCTGGCGCCCTTCGACTATGCCAGGCTCGA CCAACCCAAGGCGCCGGTGCGCCTGCGCTTGAACAGCACGGCGGTGAGTGTGCGCAATGTCGGCGACGGCGTACATATCGGCTACAGCCGAGGCGGCCAA CTCGCACAAGTACGCGGCAAACGCTGCATCCTGGCCTGCTACAACATGATGATTCCGTACCTGCTCAAGGGCCTGCCCGCGCCCCAGGCCCATGCGTTGA GCCAGAACGTGAAATTCCCCTTGGTGTACACCAAGGTGGTGATTCGTAACTGGCAGGCGTTTGAGAAGTTGGGTGTGCATGAAATCTACGCAGCTACCCA GCCTTACAGCCGCATCAAGCTGGACTACCCGGTGAGCATGGGCGGCTACGACCACCCGCGCGACCCGACGCAGCCCATCGGCTTGCACATGGTCTACGTG CCCACCAGCCCCAACAGCGGCATGAACGCCCGCGACCAGGCCCGCGCCGGACGCGGCCGGTTGTATGGGCAGACATTCGAGCAACTGGAAGCGCAATTAC GTGACCAACTGCAACGCATGCTAGGCCCGGGCGGGTTCAACCATGAGACGGATATCCTGGCGATCACCGTGAATCGCTGGTCCCATGGCTATGCGTATTT TTCCAACAGCCTGTTCGATGACGCCGACGAAAGTGAAGCGCTGATGAACCTGGCGCGCAAACCGTTGGGGCATGTGAGCATCGCCAACTCGGACGCGGCC TGGAGTGCGTACGCGCATGCGGCGATCGACGAGGCGTACCGAGCCGTGGGCGAAGTGGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AACACACCTCTGACAGGCAATACAAAACTGTTTGTGGGAGGGGGCTCGCCCCCGATAGCAGTGGGTCAGCACTGAAATAGTTGGCTGATGCACCGCTATC GGGAGCAAGCCCTCTCCCACATTGGATCTTCATAATTCGTGAGTAATGTGGTTGCCCCACAGCCCCGGAAATGTCTTGTCGCACTTGCAATGCTATCACC CCGCCATCAATCATTTTTCCTACACCATCGAACCGCTTAAGCTATCCGGCGTCTGTTTAATGTTCGTTGCGTTTGGCCGAAGGCATGTCCGAACCGTACT TTCTGATCCAGCACGTGCCAGGAACGGCGCGGGATTTGCTCACGACAGGTTGTCTCTATGCATCGTAGGAATTTGCTCAAAGCGTCCATGGCCATTGCGG CTTATACCGGTCTGTCGGCCAGTGGCCTGCTCGCCGCCCAAGCATGGGCCGGGAACCGCGCCGCCGATGGGAAAGCCGTGGCGTTCGACTTCGAATCGCT
Amino Acid Sequence
>spermidine dehydrogenase
MDITRRDFLNGVAITIAAGITPLQILQAAPDGRYYPPALTGLRGSHVGSFEVAHQMGWEKKVFDTDTLPITEDYDLVVVGGGLSGLAAAWFYREKHPKAK ILILENHDDFGGHAKRNEFQAGGRMIIGYGGSEAFQSPTHLFSEQVNGLLKKLGVNIKRFETAFDRPFYPSLGLSRGVFFDKENFGEDKLVTGDPTPMVA DDIAPEQLHGRALKDFINDFPLPAADRQALIELHTAPKDYLPGKTAEEKADYLAATSYRDFLLKNVGLSEGAVKYFQSRTNDFMALSIDAVAASDAYNVG FPGFAGMNLTPISEEAAAEMEEPYIYHFPDGNASLARLLVRSLIPGVAPGHTMDDIVLAPFDYARLDQPKAPVRLRLNSTAVSVRNVGDGVHIGYSRGGQ LAQVRGKRCILACYNMMIPYLLKGLPAPQAHALSQNVKFPLVYTKVVIRNWQAFEKLGVHEIYAATQPYSRIKLDYPVSMGGYDHPRDPTQPIGLHMVYV PTSPNSGMNARDQARAGRGRLYGQTFEQLEAQLRDQLQRMLGPGGFNHETDILAITVNRWSHGYAYFSNSLFDDADESEALMNLARKPLGHVSIANSDAA WSAYAHAAIDEAYRAVGEVA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site