Strain | Pseudomonas sp. ARP3 contig2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
ATCGTCGAGGCTGCCGGTCACTTCTTTACGGTAACGGGCGATGAAGGGCACCGTGGAGCCTTCATCCAGTAGAGCGACGGCCGCTTCGACCTGTTGTGGG CGTACACCGAGTTCCTCGGCGATGCGGCTGTTGATGCTGTCCATAAAACCACCTGAAATTCTGAAAAGCAGCTCGGGAGCCCGGTAAACAAGGCGTTGCG AGGCAAGTTGAGCGGCCCGACCGGCGCCGCTGCCTGGGTCAAGAGGCAGCCTATTGACCCTCGAAATCGAAAAAATCGCGACAAACCTGTGAAAAAACCC GGCAGTAAACGGTAACGATCTGACGTTGCCCTGCACGACGGCGCGGCATTATAACCAGCGTTCTGCTCTTGGGGGGTACTGTGCCGGAGGGGTGTAGGGC GCGGGTTCGCTGGCAGTAGAGGAAAAATCTGCTAACAATGCACACGGTGCGTATAACGGCAGCTACGCCATAATGCGCGCCGAGATAAGAGGAGCATCCA
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DNA Sequence for Gene |
>ABX75_RS03785
ATGAGCAGCACTGCACAAACTGCTGAAGGCGAAAAAATTCTCATCGTTGATGACGATCCGGGGCTGAGCAGCCTGCTGGAGCGTTTCTTCAACTCCAAGG GCTATCGTGCCCGCGCGGTACCGAACACCGAGCAAATGGACCGCCTTCTGGGGCGCGAAGTCTTCAACCTGGTCGTGCTCGATCTGATGCTTCCCGGCGA AGATGGCTTGACTGCGTGCAAGCGTCTGCGCGGCGCCAACAACCAGATTCCAATCATCATGCTCACCGCCAAGGGCGATGAGCTGAGCCGCATCAAGGGT CTCGAACTGGGCGCCGATGACTACCTGGCCAAACCTTTCAACCCTGACGAGTTGATGGCGCGTGTCAAAGCTGTACTGCGTCGCCAGGCGCCAGCGGTGC CGGGTGCTCCGGGTAGCGAAGATGAAAGCGTGACCTTTGGCGATTACGAGCTGTCGCTGGCGACCCGCGAACTCAAGCGCGGTGATGAAGTGCACATGCT GACCACCGGCGAATTTGCCGTGCTGAAAGCGCTGGTGATGAACGCCCGCCAGCCGCTTACCCGTGACAAGTTGATGAACCTGGCCCGTGGTCGCGAGTGG GATGCCTTGGAACGTTCCATCGACGTGCAGATCTCCCGTCTGCGCCGGATGATCGAACCGGACCCGTCCAAGCCGCGCTATATCCAGACAGTGTGGGGCG TGGGTTACGTGTTCGTGCCGGATGGCACCGCTACCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCGATGATTTGCAGAGGTGGGCATCCCGGCATTTGACCCCGTAAAGGTCGACGGGATGCTCGGCGTCTGCAATTCTGCGAGCGCCGCTCATTCTTGCAAG GTGTCCAGCTGTCCTCTATGAAAACCCCGTTGTGGTTCCCGCAAAGTTTCTTCTCCCGCACCCTCTGGCTGGTGCTGATCGTCGTTCTGTTTTCCAAGGC ACTCACGCTGGTTTATCTGCTGATGAACGAGGATGTGCTGGTGGACCGGCAATACAGCCACGGCGTTGCTCTTACACTGCGTGCCTATTGGGCCGCTGAC CCAGAGAATCGCGAGAAAATCGCCAAGGCTGCCACCCTGGTGCGTGTGGCCGGCGCCGGTGTGCCGGAAGGCGAGCAGCATTGGCCCTACAGCGAGATTT ACCAGCGTCAAATGCAGGCCGAATTGGGCAAGGACACCGAAGTGCGGCTGCGCATGCATGTGTCACCGGCGTTGTGGGTGCGTGCGCCAAGCCTGGGTGA
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Amino Acid Sequence |
>chemotaxis protein CheY
MSSTAQTAEGEKILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLTACKRLRGANNQIPIIMLTAKGDELSRIKG LELGADDYLAKPFNPDELMARVKAVLRRQAPAVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMNARQPLTRDKLMNLARGREW DALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDGTATK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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