Pseudomonas sp. ARP3, ABX75_RS17875
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ARP3 contig15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGTACCGGGTCAATCTGAGCGTGCGACCGCACTTCAAATACATGGGCGCGGACTTCACCTTATCCCTGGTCGGCAAGCTCGATAAAGAATGAATCGG GGGCCAGGGATGATGCGCAACCAACGCCTTTTCGAGCGTCTTGATCGCTCCGCACCTCACTCAAAATGCTGTGCGAGTTCTGTCGCGGCCCATCTGGGCA AGATGCTCAGCATCCGCGCCGGCAGTGTCCAAACGCTGCCGGATTACGGCTTGCCTGACCTCAACGATATGAACCAGAGCCTGCACGAAACCCTGAGCCG GTCGCGACTACTGATCGAGCGCTTTATCCGGGCCTACGAGCCGCGCTTGCAGAATGTCCTGGTGCGCGCCTTGCCCCGTGATCACGACCCATTGGCCCTG GCCTTTTCCATTGAAGCCACGCTGAGTGTTGACGGTGTCACGAGGCCCGTCACCTTCACTGCGCGGCTTGGCGACGCCGGTCGTAGTGAGGTCTATGCCG
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| DNA Sequence for Gene |
>ABX75_RS17875
ATGTCCGCTAACCGCTATTACCAGAGCGAACTCAGCGCGCTACGTCAGTTAGGCCGGCGTTTTTCCGATCGCAACCCGGCGCTTGCGCCATTTCTGGGAG AGACCGGCAAGGACCCGGACGTGGAGCGTTTGCTGGAGGGTTTTGCTTTCCTCACCGGTCGCCTGCGCCAGAAGTTGGATGACGAGTTACCCGAGCTGAC GCATTCGCTGATGCACTTGCTGTGGCCCAACTATATGCGACCGCTGCCGGCGTTCAGCATCCTCCAATTCGACCCGCTGCGACATGCCGGCCCCGGCGTG ACCGTTGCACGGGATACACCTGTGGAGAGCGAACCGGTCGACGGTGAGCGCTGCCGCTTCCGAACTTGTTACGCCACTCAGGTTCTGCCGTTTCAACTGA GCGCCCTGGAGTACAGCGTTAACGGCGAGCGGGCAGTGTTGAGCTTGCGCTTGGACATGAGCGCCGAGGGGAATTTCAGCGCGTGCGTATTTGACCGACT GCGCCTGCATCTGGCCGGGGACCGGTATGTCAGTCAAGGCCTGTATTTGGGGTTGCTGCGTCATTTGGACGGCATCGAGTTACGGCCGTTCGGTCGCGAC GGCGTTGGAATCGATGTCGGCAATGGCCAGGATCTGTCGCTGCGAATTAGCGCGCAAAGCGTACAACCCGTAGGGTTCGCTGAAGAGCATGCGCTGATCC CTTATCCGCCCAATACCTTTCGCGGATACCGTCACCTGCAGGAGTATTTCGCCTTTCCTGAAAAGTATCTGTTTGTCGATTTGGTTGGGCTGGATGTACT GCAGACGTTGCCGACCGCAGCCCTCCAGCAAACGTGCGGTGTGACGCTGCGTTTTGAGCTGAGCGGTCGTTGCCCGCAACTCCAGCAGCCTACGCTGGAT AACGTGAAGCTGTACTGCACGCCCATCGTCAACCTGTTTGAACATGACGCGGTTCCGATCCGCCTGGATGGCAAACAGGATGAATACTTGCTGATCCCTG GAGAATACAAGCGGGGCAATGCCGACGTGTTTTCCGTTGATCGGGTGACCGGGTGGCGCCCCGGAGGGTTGGGGTATCAGGCATACGTGCCGTTTGAATC CTTCGAGCACGACGCCAACGAGGGCTCACCCTGCTACAGCATTCGCCAACGCGCCTCCGCACATCACGGCGGTCTCGATACCTGGCTGGGGTTTGGCAAT GGCGTGGGGCAAAGCCAGGAAACCCTCTCGGTCGAGCTAACGTGCACCAATCACAACGTACCTCGGTCACTCAAGGCGGGGGCAATCAACCAGCCCTGCG AACAAACTCCCGAAGGCCTGTCGTTTCGCAATATCTGCGCGCCGACCGAGAGTTTTGCGCCGCCGCTGGATCAGGACTTTCTTTGGCGGTTGATCAGCAA CATGTCGCTCAACTACCTGTCGTTGAGCGACATCAGTGCGCTGAAGGTCGTCCTGCAAACCTACGACCTGCCGCGTTACCACGATCGGCAGGCGCAAAAA ATCAGTCAGAGAAAGCTGGACGCATTGCGCTCCATCCAGCACACGGGGGTCGACCGATTGCATCGCGGCATGCCGTTTCGCGGCGTGCGAATCGACTTGA CCGTCGACGCCCAGGGCTTTTTGGGGCCAGGCGAGATTTTTATGTTCGCGTCGGTACTCAATGAGTTCTTCACGCTGTACGCCAGCCTCAATGCTTACCA CGAACTACGAGTCATCAGCACACAAGGAGACGTGTACCAATGGCCAATCCGGATGGGCCAACAGCCCCTGCTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCAACTGAGCCGAGTCATCCGTGAGTACTCGCTGTTCCAGGCGATCGCTCGGGTGATCGAGCAGTTGCGCGATGTGCACCCGCTGCTGGATGACGACGC GTTGTATGAGCGCTTGGAGTTTCAGGCCAATCCAGGGTTGGGGTTTCCCGCTCACGATATTGATCGCTTGGAGTTTTTTGTTGAGCAGGGTCAATTGCGC GCCCGTCTTCGCCTCAACGTGTTGGGCCTATGTGGCGCGGGATCGCCGTTGCCTGCGTTTTACGCGGAACAGGCATGCGCCGAAGGGGCTGATGCAACCC GCGATTTTCTGGACCTGTTTCACCATCGATTGCAGCGTCTGATGTTGGGAATCTGGCGTAAATATCGTTACCGCACCTGTTTCGAGACAGGGGCACGCGA CGCCTTTTCCGAGCAGATGTTTGCGTTGATCGGTTTGAGGGGCCAGCCGATTCGCGCTGCCGCCCAACTGGACTGCAAGCGGCTGTTGCCTTACCTGGGG
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| Amino Acid Sequence |
>type VI secretion protein
MSANRYYQSELSALRQLGRRFSDRNPALAPFLGETGKDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSILQFDPLRHAGPGV TVARDTPVESEPVDGERCRFRTCYATQVLPFQLSALEYSVNGERAVLSLRLDMSAEGNFSACVFDRLRLHLAGDRYVSQGLYLGLLRHLDGIELRPFGRD GVGIDVGNGQDLSLRISAQSVQPVGFAEEHALIPYPPNTFRGYRHLQEYFAFPEKYLFVDLVGLDVLQTLPTAALQQTCGVTLRFELSGRCPQLQQPTLD NVKLYCTPIVNLFEHDAVPIRLDGKQDEYLLIPGEYKRGNADVFSVDRVTGWRPGGLGYQAYVPFESFEHDANEGSPCYSIRQRASAHHGGLDTWLGFGN GVGQSQETLSVELTCTNHNVPRSLKAGAINQPCEQTPEGLSFRNICAPTESFAPPLDQDFLWRLISNMSLNYLSLSDISALKVVLQTYDLPRYHDRQAQK ISQRKLDALRSIQHTGVDRLHRGMPFRGVRIDLTVDAQGFLGPGEIFMFASVLNEFFTLYASLNAYHELRVISTQGDVYQWPIRMGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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