Pseudomonas sp. ARP3, ABX75_RS15890
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. ARP3 contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGCGGTCGGTGCTCAGGACAAGTTGCTGGAAAATGTCTGGCCATCGCTCAAACCGCTGTTATGACGCTTTTCTACCGGCAGGCTTTCGGCTAAGGTGGC GCCCCCTTGATTTGGAGCCCTCGATGTCGCGTCCTGCCTGGTCCCTGTTTAACTACCAACTGATCGAGCCGGACGAGCAGCTGGATCTGTTCGCCTGCCA GGAAGTGCGGGTGCATCTGGTGACGCGTCAATTGGAACTGGGCGGCTCCATCGATCGCACGCTGTGCGGCACGTTATTGCCGGCGCAGCCGCGTTGGTCG CTGGTGGATCGGTCGATTTTCCAGGACCAGCGTTTGTGCCCCCTCTGTCGGGCTATCCTTGAGTCTCAGAAGCGCGGCACGCCGCCGATCTGGCCGGAGC TGCGTTTTGAACTCTAGAAGCAGCTGCAAGCGTCAAGCTATAAGCTGTAAGCTAGCAATTGGCTTTTAACTTACCCGTCGTTCTGCGAAGGATTTTTCGG
|
|
| DNA Sequence for Gene |
>ABX75_RS15890
ATGTTGTCGCGCCTTTCCGTCGTTACCTGCTGCCTGTCGCTTGCTGCCCTGTGTGCGGCCGGTTCGGCAGCGGCCCTGCAGTTGCCCTTGCCACCCCCGG GGGAAGACATCGTCGGCCAAGTCCAAGTGATCAAGGCCAAGTACGAAGACACCTTTGCCGATCTTGGCACTGCGTATGACCTGGGCTACTCGGAGATGGT CGCGGCCAACCCGGGCGTTGATGCCTGGTTGCCGGGCGCGGGCACCGAGATCGTGCTGCCGACGCGCTTCATCCTGCCGCCCGGGCCGCGCGAAGGCATT GTGATCAACCTCGCGGAATACCGGCTCTACTACTACCCCAAAGGCCAGAACGTGGTTTACACGTTCCCGTTGGGGATCGGTCGTGAAGGCTGGGGCTCAC CGATTGCCCACACCAGCATTATCGCCAAGACGCCCAACCCGACCTGGACACCGCCGGCCTCGATCAAGGCCGAGCACGCCGCCAATGGCGACCCGCTGCC CAACGTGGTGCCGGCTGGGCCGAACAACCCCTTGGGGCCGTTCAAGTTCACGCTGGGAACGCCGGGGTATCTGATCCACGGTTCCAACATGAAGTTCGGC ATCGGCACGCGTACCAGCCATGGCTGCTTCCGCATGTTCAACAATAACGTGTTGGAGATGGCCGATATGGTGCCGGTCGGCACCTCGGTGCGCATCATCA ACGATGCCTATAAGTTCGGCAGCAGTGGCGGCAAGGTGTACCTGGAGGCGCATACACCCCTGAACGATGACGGCACGCCATCGGTGGTGGACAAACATAC GGCGGTGATCAACGCCTTGCTCAAGCGCGAAGACCTGGCCAATAACCTGCGGGTCAATTGGGATCAGGTGCGTGACGTGGTGGCGGCGGAAGACGGTCTG CCCACTGAAATCGGTGTGCCAGGCGCGGCGCCCATGGTATCCAGTACGCCGATCGATCTGCAGCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCTGCAACCTGCCAAGCCCGCCCCGGCCTGGTGCCGCGGCGGGTTTTTTATTGGCCGGGGCACGGGTGTATCCCAGGCAATAAAAAGCCGATCCAAAAA TGGATCGGCTTGATAACAACCCCGAAGGGTTATTACTTGCGGCTAGCTTTTTCAAGCATGCGCAGAGCGCGCTCGTTAGCTTCGTCAGCAGTCTGTTGTG CTTTTTGAGCAGCAGCCAGAGCTTCATCAGCTTTACGGTAGGCTTCGTCTGCACGAGCCTGGGAGCGAGCTGCTGCGTCTTCAGTTGCAGTCAGACGAGC TTCGGTTTCTTTGGAGACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAGAGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTCAAG GACTTTCTATTAAATGGCTACTTCTCAGATTGAGCTTATAGCCGGCGTACATACTACCCATTACTTGTAGTAAGTAAACTGACGCAGCGCAAGAAGCAAA
|
|
| Amino Acid Sequence |
>transpeptidase
MLSRLSVVTCCLSLAALCAAGSAAALQLPLPPPGEDIVGQVQVIKAKYEDTFADLGTAYDLGYSEMVAANPGVDAWLPGAGTEIVLPTRFILPPGPREGI VINLAEYRLYYYPKGQNVVYTFPLGIGREGWGSPIAHTSIIAKTPNPTWTPPASIKAEHAANGDPLPNVVPAGPNNPLGPFKFTLGTPGYLIHGSNMKFG IGTRTSHGCFRMFNNNVLEMADMVPVGTSVRIINDAYKFGSSGGKVYLEAHTPLNDDGTPSVVDKHTAVINALLKREDLANNLRVNWDQVRDVVAAEDGL PTEIGVPGAAPMVSSTPIDLQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|