Pseudomonas sp. AAC, FG99_RS26725

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. AAC Scaffold8, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACCTGCACCAACCAGAACCTGCCGCGCCGCCTGAAGCTGGGCGACATCAACCTGGCCAGCGAGAAGACCCCGGAGTTTCTCAGCTTCCGCAACATCACCC CGGTGACGTCCAGCTACGCGCCGCCGCTGAATCGCGACTTCCTCTGGAAGCTCATCAGCAACATGTCGCTGAACTACCTGTCGCTGGCCAACATCGAGGC GCTCAAGGTGATCCTCGAGACCTACGACCTGCCGCGCTACTACGACCAGCAGGCCGAGAAGGTCAGCAAGAACCTGCTCAACGGCCTGCGCTCGGTCCGT CACGAACCGGTCGACCGCCTGCACCGCGGCCTGCCGGTACGCGGCCTGCGCACCGAACTGACGATCGACCCGCAAGGCTACATCGGCGAAGGCGACATGT TCGTCTTCGCTTCCGTGCTCAATGAATTCTTCGCGCTCTACGCCAGCCTCAACTCGTACCACGAGCTGCAGGTGAAAAGCACACAGGGAGAGGTGTACCA
DNA Sequence for Gene
>FG99_RS26725
ATGGACACCGCGCATGGGACAGCAGCCCCTGCTCTGAGCCGGCTCAGCCGGGACATTCGCGAGTACTCGCTGTTCCAGGCCGTGCTCCTGGTCATCGAGC GCCTGCGCCAGGCGACCCCGGAGGGCCTGCCGTGCAGCGACGAGGCGCTCTACGAACGCCTGGAGTTCCAGGCCAACCCGAGCCTGGGTTTTCCCGGCAG CGATATCCACAGCGTGCAGTTCTTCGAGGAGAACGGCGAGCCGCGCGCGCGCCTGCGCCTGAACCTGGTCGGCCTGTGCGGCTCCGGCTCACCGCTGCCG GCCTTCTATGGCGAGCAGGCGCTGGGCGACAGCGAGGACGGCAACCCGACCCGCGATTTCCTCGACCTCTTCCATCACCGACTGCACCGGTTATTGCTGC CGATCTGGCGCAAGTACCGCTATTACGCCCGCTTCGAAACGGGCGCGCTGGACGCCTTTTCCGAGCGTCTGTTCGCCCTCATCGGCCTGGGCGGCGAGCA GTTGCGCCGCGCCGAGGAGCTGAACTGGAAGCGCCTGCTGCCGTACCTGGGCCTGCTCAGCCTGCGAGCCCATTCCGCAGCGCTGATCGAGGCGGTGCTG CGTTACTACTTCAAGCACGCCGCGCTTTTCATCGAGCAGTGCATCGAGCGCAGCGTGTGCATCCAGGCGGACCAGCGCAACCGCCTCGGCCTGGCCAACA GCCGCCTGGGCGAGGACCTGGTGCTGGGGGAACAGGTACGCGACCGCAGCGGCAAGTTCCGCATCCACATCCGCGAACTCGACTGGGAGCGCTTCCACGA CTTCCTGCCGATCGGCAACGGCTATCAACCGCTCTGCGCCCTGGTGCGCTTCACCCTGCGCGACCCGCTGGACTACGACCTGCGCCTGGAACTGCACCAC GAGGCCATCCGCGAGCTATGCATAGGCGCCGACAACCCTTGCCGCCTGGGCTGGACCAGTTGGCTGGGACGGGAGCATGCCGACGGCATCGTCACCCTGG GCAGCCGCATTCATTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGACCGATGACCCATGATCAACCTCGACCTGCAACAACTCGTCCAGGCCCTGGACACCGAGACCCGCCGCGACCTGGAAGGCGCCGCCGAGCGCTGCGTG GCCCGCAACGGCAGCAAGATCCTCGTCGAGGATCTGCTGCTGGCGCTGCTGGAACGCCCCCAGGGCCTGTTGCAACGCGCCCTGCAGGATGCCGGAGTGG ACGCCGGCGAGCTGGCGGCGGCGCTGCAGCCGCGCGCCGAGAACAGCGCCTCGCGCAACCCGGTGTTCGCCGTGGAGCTGATGCAGTGGCTGCAGGACGC CCTGCTGGTGGCCAACCTGGAACTGCGCCAGAGCCTGATCGACCAGGCCGCGCTGATCCTCGCCCTGCTGCGCAATCCCCTGCGCTATGCCGGCAGCCAC TACCAGGAGCTGCTGGCCAGGCTGAACGCCGAGCGCCTGCGCGAATACGCCCTGGCCCAGCAGGAGCGGCAGCCCGCCGCAGGCGGCGCCAATTCCGGCG
Amino Acid Sequence
>type VI secretion protein
MDTAHGTAAPALSRLSRDIREYSLFQAVLLVIERLRQATPEGLPCSDEALYERLEFQANPSLGFPGSDIHSVQFFEENGEPRARLRLNLVGLCGSGSPLP AFYGEQALGDSEDGNPTRDFLDLFHHRLHRLLLPIWRKYRYYARFETGALDAFSERLFALIGLGGEQLRRAEELNWKRLLPYLGLLSLRAHSAALIEAVL RYYFKHAALFIEQCIERSVCIQADQRNRLGLANSRLGEDLVLGEQVRDRSGKFRIHIRELDWERFHDFLPIGNGYQPLCALVRFTLRDPLDYDLRLELHH EAIRELCIGADNPCRLGWTSWLGREHADGIVTLGSRIH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site