Pseudomonas sp. AAC, FG99_RS26265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 479 | 644 | 6.1E-42 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 485 | 638 | 5.4E-43 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 369 | 471 | 6.06833E-14 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 474 | 642 | 3.0E-54 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 474 | 644 | 3.6E-57 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 484 | 641 | 2.7E-41 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 307 | 360 | 2.3E-4 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 54 | 215 | 3.2E-25 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 360 | 426 | 1.1E-11 |
| CDD | cd06225 | HAMP | - | - | 310 | 355 | 0.00179241 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 486 | 641 | 1.80445E-59 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 357 | 481 | 6.0E-24 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 347 | 472 | 5.64E-28 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 360 | 473 | 1.1E-24 |
| PANTHER | PTHR46663 | DIGUANYLATE CYCLASE DGCT-RELATED | - | - | 186 | 645 | 4.5E-80 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 490 | 641 | 4.71E-46 |
| Coils | Coil | Coil | - | - | 341 | 361 | - |
| Gene3D | G3DSA:6.10.340.10 | - | - | - | 269 | 359 | 6.6E-8 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 308 | 357 | 1.4E-6 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 361 | 471 | 7.8E-19 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.