Pseudomonas sp. AAC, FG99_RS16435 (rimO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. AAC Scaffold4, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAGGACGAAGATCACGTACTTGATCGAGACCACCCAGACCAGCGACCAGAAGATCAGCGAGAGGATGCCGAGGATGGCGTCGTGCCCCACCTGCACGCC GTAGCCGCCGACGAAGACTTCCTTGAGCGTGTACAGCGGGCTGGTGCCGATGTCGCCGTAGCAGACGCCCACTGCGGCCACCATCATGCCCAGGGCGGAG CTTGAATGGTTTTCCTGCTGCTCCGCGGTTCCAGCGCTGGCGTTGGACATGTAACAAAATTCCTCTAGGAAAAATTCGGCGCATCCTGCGCCGACGGGCC CCGCGATGCAAGAGCCACGAAAACCTGATCTGAGTGACTATAGAAGGTGTTTGCCGCCCTTACCCTGTGTCTGCCGGCGCTTTCGCCGGCCGCTGCGGCA GCTTGTCTCACGGAGGCTGGTCAAGCGCGCGGGCTGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCCGCCAGCGCGCCCTTAGAGGTTAGCCGCCC
DNA Sequence for Gene
>FG99_RS16435 |rimO
ATGTCCACCGCAACGCCCAAAGTCGGTTTCGTCAGCCTCGGTTGCCCCAAGGCAACGGTCGACTCCGAACGCATCCTCACCCAGCTGCGCATGGAGGGCT ACGAGATCGTGCCCACCTACGAGGACGCCGACGTCGTTGTGGTGAACACCTGCGGCTTCATCGACAGCGCCAAGGCCGAATCCCTGGACGCCATCGGCGA AGCCATCGCCGAGAACGGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGCCGAGGACAGCATCCGCGACGTGCACCCCAGTGTGCTGGCCGTCACCGGT CCGCAGCAGTACGAACAGGTGGTCAGCGCCGTGCACGAGGTGGTGCCGCCCAAGGCCGAGCACAACCCGCTGATCGACCTGGTGCCACCGCAGGGCATCA AGCTCACCCCGCGCCACTACGCCTACCTGAAGATTTCCGAGGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGGCAAGCTGGTCAG CCGCCCGGTGGGCGACGTGCTCAGCGAGGCCCAGCGCCTGGTCAAGGCCGGCGTCAAGGAACTGCTGGTGATCTCCCAGGACACCAGCGCCTACGGCGTG GACCTGAAGTACAAGCTGGACTTCTGGGACGGCCAGCCGGTGAAGACGCGCATGCTGGAGCTGTGCGAAGCGCTGTCGAGCATGGGCGTGTGGGTGCGCC TGCACTACGTCTACCCCTACCCCAACGTCGACGACGTCATCCCGCTGATGGCCCAGGGCAAGCTGCTGCCCTACCTGGACATCCCCTTCCAGCACGCCAG CCCGAAAGTGCTCAAGTCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCGCGCATCAAGAAGTGGCGCGAGCTCTGCCCCGAGCTGACCATCCGC TCGACCTTCATCGTCGGCTTCCCCGGCGAGACCGAGGAAGACTTCCAGTACCTGCTCGACTGGCTGACCGAAGCCCAGCTCGACCGCGTCGGCTGCTTCC AGTACTCCCCGGTGGAAGGCGCCCCGGCCAACGACCTGGGCCTGGAGTCGGTGCCCGATGACGTCAAGCAGGAGCGCTGGGAGCGCTTCATGGAGCACCA GCAGGCGATTTCCGCCGCGCGCCTGCAACTGAAGGTGGGCAAGGAAATCGAAGTGCTGATCGACGAAGTGGACGCCGAAGGCGCGGTGGGCCGTTCCTGG GCCGACGCCCCGGAGATCGACGGCGCCGTCTACATCGATACCTTCGACGTGAAGCCGGGCGACAAGGTGCGCGTGCGCATCACCGACGCCGACGAGTACG ATCTCTGGGCCGAGCTGGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCGCCGAAAGCCCCGCCTTGCGGGGCTTTTTCTTTCAACCGGGACACTACCGATGCTCAACAACGACATCCTGCGCAGCCTGCGCTACAGCCTCGACAT CGCCGACCGCGAGGTCGCCGCCATCGCCGGCCTGGCCGGATTGGCGCTGGACGAGGCCGAAGTCGCCGCGCTGCTGGCCCGCGAGGACGAACCCGGTTAC CGGGAGTGCCCGGACGAAGTGCTGGCGCGCTTTCTCGACGGCCTGATCATCCACCGCCGCGGCCGCGACGACAGCCGGCCGCTGCCGCCGCTGGAACTGC CGCTGACCAACAATCTGGTGTTGAAGAAGTTGCGGGTGGCCTTCGAACTGCGCGACCACGACCTGCTGGCGATCCTCGACGACGCCGGGCTGGTGATGAC CAAGGGGGAACTCAACGCGCTGTTCCGCGCCCCCGGCCACAGTAACTACCGTCCCTGTGGCGACCAGTTGCTGCGCAATTTCCTCAAGGGCCTGGTCCGG
Amino Acid Sequence
>ribosomal protein S12 methylthiotransferase
MSTATPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDSAKAESLDAIGEAIAENGKVIVTGCMGVAEDSIRDVHPSVLAVTG PQQYEQVVSAVHEVVPPKAEHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAQRLVKAGVKELLVISQDTSAYGV DLKYKLDFWDGQPVKTRMLELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAQGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKKWRELCPELTIR STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLESVPDDVKQERWERFMEHQQAISAARLQLKVGKEIEVLIDEVDAEGAVGRSW ADAPEIDGAVYIDTFDVKPGDKVRVRITDADEYDLWAELA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site