Pseudomonas sp. AAC, FG99_RS10805
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. AAC Scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTGAATATAAGACAGTAACGATTCACCGAGATGGTAAAAGGGCGAACATGGAACAGCATTCCGATGGTTTGAAGGTGATGGTCATCGACGATTCCAAGA CGATCCGTCGTACCGCCGAAACCCTGCTCAAGAAAGTCGGCTGCGATGTCATCACGGCCATCGATGGCTTCGACGCGCTGGCGAAGATCGCCGACACCCA TCCGAACATCATCTTCGTCGACATCATGATGCCTCGGCTCGACGGCTATCAGACCTGCGCCCTGATCAAGAACAACAGCGCCTTCAAATCCACCCCGGTG ATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGTATCGTCGGCTCCGACCAGTACCTCACCAAGCCCTTCAGCAAGGAAGAGCTGC TCGGCGCCATCAAGACCCACGTGCCCGACTTCACCCCGGTGGAGCAAGCTTCCTGATGTCCGGCCCTGCGTGCCGGTGATGCCTTTTCCTGGGGGACCCC
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| DNA Sequence for Gene |
>FG99_RS10805
ATGGCTCGAATCCTCATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCGATGCTGGAGAAGCACTCGCACCAGGTGCTCAAGGCGGAGAACG GCGCCGACGGCGTCGCCCTGGCCCGGCAGGAGAAGCCGGACGTGGTCCTGATGGACATCGTCATGCCCGGGCTGAACGGCTTCCAGGCCACCCGGCAGCT GTCCAAGGACCCGGAGACCAGCGCCATCCCGGTCATCATCGTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGAC TACCTGACCAAGCCGGTCGACGAAGAAACGCTGCTCAAGACCATCAATGCGGTACTCGCCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCGGGCGGGGCCCGAATAACTATTAGAAAAGGCCAGGGCCGGCATGTCTGAAGTCCAGAGTCCCTTCCAGCTTCTCGTCGAGATCGATCAGCGCTGCC GTCGCCTGGCTGCCGGCCTGCCGGCGCAGCGCCAGGTCGTGCAGAGCTGGAACGGCATCGGCTTCCGCATGGCCGGCCGCCTGTTCGTGGCGCCCATGGG GGAGGTCGGCGAAGTGCTCCACGAGCCGCGCTACACCCTGTTGCCCGGCGTGCGCGAGTGGGTCCGGGGCGTGGCCAACGTCCGCGGTCGGCTGCTGCCG ATCATGGACCTGTGCGGATTTCTCGGCGCGGAGCTGTCGCCGTTGCGCAAGCAGCGCCGCGTGCTGGTGGTAGAACACGGGGAGGTGTTCGCCGGGCTCA TCGTCGATGAGGTCCTGGGCATGCAGCACTTCCCGGTGGATGCCTTCAGCGAGCAGTTGCCACCCCTTGAGGCGGCGCTGCAACCCTTTGTTCATGGCGT
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| Amino Acid Sequence |
>twitching motility protein PilH
MARILIVDDSPTEMYKLTAMLEKHSHQVLKAENGADGVALARQEKPDVVLMDIVMPGLNGFQATRQLSKDPETSAIPVIIVTTKDQETDKVWGKRQGARD YLTKPVDEETLLKTINAVLAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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