Pseudomonas sp. AAC, FG99_RS06640
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. AAC Scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATACAGTGCCAACTATGTGAAGAAGATTATCTTCCCACTGGAGATTCTACCAATCATCTCCTTGGCAACTTCGCTCTTCCACGGTTTGGTGAGCTTTCTG GTGTGGTTTATTTTCCACATCATTATCTTCGGAGTGCCTCACCCGCAAGTACTTTATTTTCCACTGGTAGTACTCCCCTTGCTGATGGCAACTCTGGGAC TTTCGTGGCTATTGGCATCTGCCGGCGTTTACCTACGCGACGTCTCCCAGGTTATCGGCATTCTCACTACAGCACTGATGTTCCTCTCGCCGATCTTCTA TCCGCTCTCGTCACTGCCAACGGAGCTCCAGCCGCTATTCATGATCAATCCATTGACCTCTACCATCGAGCAAACACGCGCGGTACTGATCTTTGGCCAG CAGCCGGACTGGTATGGCCTAGGCATATCCATGCTAGTAGCCAGCCTGATTCTTTGGCTCGGCTTCGCTTGGTTCCAGAAAACACGCAAGGGGTTCGCGG
|
|
| DNA Sequence for Gene |
>FG99_RS06640
ATGTCCTCTGACGTTGCGATCAGCATCAAGAACCTGAGCAAGTGCTATCAGATATATGACAACCCAAGGGATCGCCTGAAGCAATTCATCCTTCCGAGGT TCTCACGCTCTGGCAAGCAATATTTCCGCGAGTTCTGGGCTCTGCAGAATATCAGCCTGGATATACGCCGCGGTGAAACACTGGGCATCCTAGGCCGCAA TGGTGCGGGCAAGTCCACACTACTCCAGATCATTTGCGGCACTCTCTCCCAAACGGGCGGCAGCGTTGACGTCAACGGTAGGATCGCAGCACTGCTAGAA CTTGGCGCTGGCTTCAATCCGGAGTTCACCGGGCGAGAAAATGTCTACTTGAACGGTAGCGTACTAGGGCTAAGTATTGAGGAAATCGATCGACGCTTTG CTGAAATCGAGAGCTTTGCAGATATTGGAGATTTCATCGATCAGCCCGTCAAGTCCTATTCCAGCGGGATGTACGTTCGCCTGGCATTTGCTGTGCAAGC CTGCGTGGATCCAGAGATTCTGATCGTCGACGAAGCGCTATCCGTTGGCGACATCGGTTTCCAATACAAATGCTTCAAGCGCATGGAAGCACTGCGCAAG AAAGGCGTGACCATCATCATGGTCACCCACTCAACCGGTAGTATCCTGGACTACGCCGACCGCTGCATAGTGCTGGAACGCGGTCGGATTACCACCAATA CCACCGATGTACTTTCGGCGGTGCTGGCCTACGAGAAGGGCATGCTAAGCCAGGAAAAGAGCGCGCCACGCCAGATAAATGAGGCAACTGCCACAGAACA CCTTCTCGACACCGCCCAACTCAAACAGATCCAGGCGGCAGAGACTAACAAGGAACTCAATGAAAAGCGCTTTGGCTCTGCCCGCGCAATCATCCGCAGC CTAGAAACGGTCAAATCGGACGGAAAGAGCCTTTCCGAAGAACCGATCGTCCGCAGCGGCGAAGAAGTAACCTTCCGCGTCACCCTCACAGCCACTGAAG CGATCAACGATGCCATCCTGGGAATCTCGATCTCGCGCAGTCAGGGGGCCGATATCTGGGGTGACAACAATCTAAACGCCGGTTACACGCTGGATCTCGT TCCCGGCACCCAGGTCATAGAATATGCGGTAAAGCTTCCCATCAGCCAAGGCGACTACCTGATCCATTGTGGCCTGGCCTGTATCAATCAGGGGGAGCGC GAAGAGCTTGATCAGCGACGTCCAATCCAACAGATCAAGTTCTGGTCGGCGCGAAACCAAGTTGGAGTGGTGTTCTCGCCCGTCAAAGTCAGTCAGGGCA ACGCACAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTGCGGTTTTCCTTCCACCCTATCCTTTCCGAGGAACTCCAGCCCCGTACTTGTGGGTCTTCTACAAGTTCATTAGCCAGAGTACTGAACCACTGTACTT CATAACTGGCGAAGAATACCTGGACTTGGAGGGCAACGCCGGCCGCTGGGAACATACAAGCAACGCCCCCAAACGCTTGAACTACACTATCCCATCTCGG GAAGTGCTGGATCGCCATCGGTTCCATATGCTCTCGCAGGCGCCTTTCGAAGTGCAGTTGGCCCAACGGAATCAGAATCCTGTTGCAGTATTCAAGGATT TTCTGACCATTGACCTTCCTAGCCTCGGTAATGAACTCGAGGAGGCCCTGAATCGTGCCCCGGATCTGGAAGCCATCATTACATGGTGTAACTGCCCTAC TCTGACAAGAGTCGCCAACCAATACGACATTCCGGTCATACACTTGGAGTTGGGGCCTTTGCGAAGCCCTGAGTACCGCGCTACAGCCTACCTCGACTTC
|
|
| Amino Acid Sequence |
>ABC transporter
MSSDVAISIKNLSKCYQIYDNPRDRLKQFILPRFSRSGKQYFREFWALQNISLDIRRGETLGILGRNGAGKSTLLQIICGTLSQTGGSVDVNGRIAALLE LGAGFNPEFTGRENVYLNGSVLGLSIEEIDRRFAEIESFADIGDFIDQPVKSYSSGMYVRLAFAVQACVDPEILIVDEALSVGDIGFQYKCFKRMEALRK KGVTIIMVTHSTGSILDYADRCIVLERGRITTNTTDVLSAVLAYEKGMLSQEKSAPRQINEATATEHLLDTAQLKQIQAAETNKELNEKRFGSARAIIRS LETVKSDGKSLSEEPIVRSGEEVTFRVTLTATEAINDAILGISISRSQGADIWGDNNLNAGYTLDLVPGTQVIEYAVKLPISQGDYLIHCGLACINQGER EELDQRRPIQQIKFWSARNQVGVVFSPVKVSQGNAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|