Pseudomonas sp. AAC, FG99_RS04265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. AAC Scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGCGTGCGCCACCCGGGCAAGCGCTGGCGCGGCCGCGAGGTCGCCGAGCCGCGCGGCAAGTCCTGGCTGGGCTGGCTCTCCGGCGAGACCGAACGCG CCCACGACGAGAAGACCGTGACCGGCTGGGAACTGTTCGGCATGCGCGCCATCCGCCAGGGCGACTGGAAGGCGGTGTACATCCCCGCGCCGGTGGGGCC GGCCAGTTGGCAGCTGTACGACCTGGGCAAGGATCCGGGCGAGATCCACGACCTGGCCGAGGCCCAGCCGGGCAAGCTGGCGGAGTTGATCGAGCACTGG AAGCAGTACGTCAGCGAGACCGGCGTGGTGGAGGGGGCTTCGCCGTTCCTGGTGAAGTGATGCGCTGAGCGACGAAAAAGCCCCGGGCAGCGATGCCCGG GGCTTTTGTTTTTTGCACCTCCTTTAGGCTGTTCAAAGCTTGAGCTGCGTGCTAAAAGAACCTAGAGCTGATCTAGCCGCTTGAAAAAGAAGGGAAAACC
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| DNA Sequence for Gene |
>FG99_RS04265
ATGACCAAGTCGGAGTTGATCGAGAGAATCGTCACCCATCAGGGGCAGCTTTCCGCAAAGGATGTGGAGCTGGCGATCAAGACGATGCTTGAGCAGATGT CCCAGGCTCTGGCTACCGGCGATCGCATCGAGATCCGTGGGTTCGGCAGTTTCTCTCTGCATTACCGCGCACCGCGCGTCGGCCGGAATCCGAAGACCGG CGAATCGGTGCGTCTGGATGGTAAATTCGTTCCGCACTTCAAGCCGGGCAAGGAATTGCGCGATCGGGTGAACGAGCCCGTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGCTAGAGAACGATCGAGGATTTTTCATGCTTCGGCTCAAACGCTTTCTGGCCTTCCTGGCTGCCATCCTGCTCTGCGCAGTAGTGGTCGTCTTCGTC CTGGAGAACCTGCAGAAGGTTCAACTGGCCTTCCTGGGCTGGCAGACGCCGGAGTGGCCGCTGGTGGTCTTCATTACCCTGTCCTTCGTCCTGGGTGGTG TCATCGGCCTGCTGCTGAGCATTCCGTTCCGGGCGCGCACGCGCCTGCATCTCTCGGGGCTGCGTTCCGAAGTGTCGCGCTTCCGCAAGGAAAACCAGGC CCTGCGCGACCAGTCGCTGAAGACCCAGTGATACCGGGATGTCCAGCGTTGTAGCAATGCTGCTGTTCGTTTTGGCCCTGGCCGTCGGTTGGTGGCTGGG GCGTCGCTCGTTGCGCCCGGGCTCTTGGCCGGCTTCGGCTGATGAGGCGTTGCGCGAGCGGGTGCGCAACATGCACAACTTGCTCGACCGGCATTCCGAC
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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