Pseudomonas sp. AAC, FG99_RS00120 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. AAC Scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCAGCGAGAGGAGAAGGCCATGAACGACGAGCGCAAGCACAGCCAGCCGCAGGAAATCGACGACACCGAGGACCGCATGGGCTCGGTGCGCGAGCTGG ATTTCGAGGACGAGCGCGCCGCGGGCCGCATCGGCGACGAGCGGCCGCGGCGCGAGGTGAATGAGGAGTTCCCGCCGCAGCGGGCTGCCGAGATGGGCAT GACCGGCGGCGAGACCCTGGTCGATGGCGAGTACGAGGACCACGTGGACAGCGACGACCTGGCCCCGGAGACGCTGCTCGACGAAGGTACCGAGTCCGAA CTCGAGCCCGCCGACGAAACCCCGGTGGACCGCGAACTGCGGGTGGTGGGCGAGGAGGAGATCGGCGGCGGCATCGGCCTGGACGAGGCCGAGCTGGGCC GCTCCGCGCCATTGGACGGCAAGCCCTGGACCGACCAGGTGTCGCCGCCGGACACTGACGAGGAAGAACGCTGAAGCGGCCCGCCGCGGAGGAAACACCC
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| DNA Sequence for Gene |
>FG99_RS00120
|ligD
ATGGCCAGTGATACGCCGAGCCTGCAGGAGTACGCCCGCCGCCGCGACTTCAGCGGCACGCCGGAGCCGCGCGGCGAGGCCCCCGGACGCCAGGCCGGGG AACTGGAATTCGTCGTCCAGAAGCATGACGCCAGCCACCTGCACTACGACTTCCGCCTGGAACTCGATGGCGTGCTCAAGAGCTGGGCGGTGCCCAAGGG GCCCTGCCTGGACCCTTCGGTGAAGCGCCTGGCCATCGAGGTGGAGGACCACCCGCTGGAATACGCCGGCTTCGAGGGCCACATCCCCGAGGGCCATTAC GGCGCCGGCGACGTCATCGTCTGGGACCGCGGCCGCTGGCAGCCCCTGGGCGACCCGCGGCAGGGCCTGGAGAACGGCCACCTGAAGTTCCGCCTGGAAG GCAGCAAGCTGCACGGCAGCTGGAACCTCATCCGCACCCGCATGGCCGGGCGCAAGCCGCAGTGGTTCCTGGTCAAGGGGCGCGACGATGAGGCCCGCGA CTTCCCCCGCCACGACATCCTCGCCGAGGCGCCGCAGAGCGTGCTCAGCGGGCGGACGCTGCCCGGCGAGGCGGCACCGGCGCAAAAGCCGGCCGACCCG CCCAGGCGCGCCGCCGCGGCCAAGGCGCCGCGCCGCAAGGCCGCCAAGGCCGGCGCCATGCCCGAGCGTATCTCCCCGGAACTGGCCACGTTGCTGGATG CGCCCCCGGAGGGCGACTGGCGCTACGAGCTGAAGCTCGACGGCTACCGCATCCTGGCACGGGTGGAAAAGGGCGAGGTGCGCCTGCAGACGCGCAACGG CCACGACTGGGCGGAGCGCCTGCCGGACATCTGCGCCGCGCTGCGCGCCCTGCCGCTGGAGTCGGCCTGGCTCGACGGCGAAATCCTGGTGGTGGACGAG GAGGGTCGCCCGGACTTCCAGCGCCTGCAGAACGCCTTCGACGTCGGCGCCAGCGACGAGGTGCGCTACACCCTGTTCGACCTGCTCTGGCTGGACGGCG AGGACCTGCGCCGGCAGCCCGTGGAGCAGCGCCGCGCCATGCTGGCCGGGTTGCTGAAGCACAATGCCAGCGACCGCCTGCGCTACTCGGAGGATTTCAC CGACGACCCGCGCAGCATCCTCGACAGCGCCTGCCGCCTGGGCCTGGAAGGGCTGATCGGCAAGCGTGTCGGCAGCGCCTATGTCGAGCGCCGCTCCACC GACTGGATCAAGCTCAAGTGCAAGCGCCGCCAGGAATTCGTCATCCTCGGCCTGACCCCGCCCAAGGGCAGCCGCCGGCATTTCGGCGCGCTGCTGTTGG GCCTGCACGATGACCAGGGCGAGCTGCGCTACGCCGGCAAGGTGGGCACCGGCTTCGATGCCGCCACCCTCAAGCGGGTGCACGACAACCTGCGCCCGCT GGCCAGCAAGACCTGCCCGCTGGCCTCGCCGCCGCGCGGCCAGGCCTTCCAGGGCGTGACCTGGCTGCGCCCCGAGCGGCTCTGCGAAGTGGCCTTCGCC GAAATGACCCGCGAGGGCCTGGTGCGCCACGCGGTGTTCCACGGCCTGCGCAACGACAAGCCCGCCGAGGCGATAGTCGAGGAACGCGCGAAGCCGGCGG CCGGGGAGGGCGCGCAGCCCATGGCGAAACGCCCGCGCAAGGCGGCGAAGGACGACGCGAAGGTGGCCGGCGTGGCCATCACCCACCCCGAGCGGGTGAT CGACGCCGCCAGCGGCCTGCGCAAGCTGGACCTGGCGCGCTACTACGAGAGGGCCGCCGAGCACATCCTGCCCTGGCTCGGCGACCGTCCGGTATCGCTG CTGCGCGCCCCGGACGGCGTCGGCGGCGAGGTGTTCTTCCAGCGCCACGCCTCGCGCAACGCCATGCCCGGAGTGGAACAGCTGGACCCGCGCCTGGACC CGGGCCACGCGCCGCTGCTGCGCATCGCCACCGCCAAGGCCCTGGCCGGCGCCGCACAGATGGGCGTGGTCGAGCTGCACACCTGGAACGCCCGGGTGGA CGACCTGGAGCACCCCGACCGCTTCGTCCTCGACCTGGACCCCGACCCCAGCCTGCCCTGGGCGCGGATGATCGAGGCGACCCGGCTGACCCTCGCAGTG CTCGACGAACTGGGCCTGGCCTGCTTCCTCAAGACCAGCGGCGGCAAGGGCATGCACATCCTGGTGCCGCTGGAGCGCCGCCACGGCTGGGACGAGGTCA AGGACTTCGCCCACGCCATCACCCGCCACCTGGCCAGGCAGATGCCGGACCGCTTCAGCGCCGTATCCGGGCCGAAGAACCGCGTCGGGCGGATCTTCGT CGATTACCTGCGCAACAGCCGCGGCGCCAGCACCGTGTGCGCCTGGTCGGTCCGCGCCCGCGAAGGCCTGCCGGTGTCGGTGCCGGTGGCCGAGGGCGAG CTGGATGCGTTGCGCGGCGCCAATGCCTGGAACCTGGGCAACATCGACGAGCGCCTGGCGCTGAAGGGCGAGGATGACCCCTGGGCGAGCTGGGGCGAGA CCCGGCAACGCCTGACGCGGCGGATGTGGCAGCAGTTGGGCGAGGAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACCGGCCTGCCGGCCGGATCGCGGACGAAGTCCGCTCCTACGTCCGCAAACACAATCCGTAGGATGGCGTTGAGCGAAGCGATACCCATCACCGTGGCC GCATGGGTTTCGCCAAGGCTCAACCCATCCTACGAAAAGCGCTTCACAGTTGCTCCTACGTCCGGGCTGTAGGGCGGATAACGCCTATGGCGTTATCCGC CGTTTGGCCTTGGTTTCCAGCAGCTCCGGGGGGATCTGGGCGTTGGCCATGACCTCGGTGTATCGGCGGATAACCGCGAACGGTTATACGCCCTACGTCA CTGACGAAGGAGGCGTCCTCCCACGGTTCCAGGAAGCACGGCTTTTTGTCTTGCCCCGCGCGCCGAGGCGCTCTGGTGGGTCGTGTCAAGGCTCAACCCA TCCTACGAAAAGCGCTTCACAGTTGCTCCTACGTCCGGGCTGTAGGGCGCATAACGCCTATGGCGTTATCCGCCGTTTGGCTTTGGTTTCCAGCAGCTCC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MASDTPSLQEYARRRDFSGTPEPRGEAPGRQAGELEFVVQKHDASHLHYDFRLELDGVLKSWAVPKGPCLDPSVKRLAIEVEDHPLEYAGFEGHIPEGHY GAGDVIVWDRGRWQPLGDPRQGLENGHLKFRLEGSKLHGSWNLIRTRMAGRKPQWFLVKGRDDEARDFPRHDILAEAPQSVLSGRTLPGEAAPAQKPADP PRRAAAAKAPRRKAAKAGAMPERISPELATLLDAPPEGDWRYELKLDGYRILARVEKGEVRLQTRNGHDWAERLPDICAALRALPLESAWLDGEILVVDE EGRPDFQRLQNAFDVGASDEVRYTLFDLLWLDGEDLRRQPVEQRRAMLAGLLKHNASDRLRYSEDFTDDPRSILDSACRLGLEGLIGKRVGSAYVERRST DWIKLKCKRRQEFVILGLTPPKGSRRHFGALLLGLHDDQGELRYAGKVGTGFDAATLKRVHDNLRPLASKTCPLASPPRGQAFQGVTWLRPERLCEVAFA EMTREGLVRHAVFHGLRNDKPAEAIVEERAKPAAGEGAQPMAKRPRKAAKDDAKVAGVAITHPERVIDAASGLRKLDLARYYERAAEHILPWLGDRPVSL LRAPDGVGGEVFFQRHASRNAMPGVEQLDPRLDPGHAPLLRIATAKALAGAAQMGVVELHTWNARVDDLEHPDRFVLDLDPDPSLPWARMIEATRLTLAV LDELGLACFLKTSGGKGMHILVPLERRHGWDEVKDFAHAITRHLARQMPDRFSAVSGPKNRVGRIFVDYLRNSRGASTVCAWSVRAREGLPVSVPVAEGE LDALRGANAWNLGNIDERLALKGEDDPWASWGETRQRLTRRMWQQLGEER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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