Pseudomonas sp. 21, UB43_RS21685
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 21 contig9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCCACCTGCTGCGCCCGCGCCTGATCGGCTACGCGGCGGTGCTGCTGGTGATGATCGGCGCCTTCGTCTGGGCGCTGGAAGCGCGGCCGCTGATCAACC TCGACGTCGCCCGCGACCGTGGCCTGTTCCGCGAGAACGCCGCCGGCGAGATCGAGAACATCTACAACCTCAAGCTGATCAACAAGACCCAGCAGCCGCA GCATTACCACCTGAGCCTCGCCGATGGCGCCGGCTACCGCCTGCAGGGCGTGCCGGAGCTGATGCTGCAGCCGGGCGAGATCCGCGACTTCGCCGTCTCG GTGGCCAGCGAAGCGCAGCGCAGTGCCGGTGGTTCGCTGCCGCTGCACTTCAGGGTCAGCGACGGTAACGAGGCCATCGACGCCGCCAGCACCTTCGTCT CGCCGAGGCGCTGAACATGGCACGGGAGCTTGGCGTGACCTCGGCGCAGCGCCTAGAGTGGGCGGATTCTTCCGCCCCCCAGGCCGCCGTGCAGGACAAG
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| DNA Sequence for Gene |
>UB43_RS21685
ATGAAGCGCTACGAGAAATTCGCCGACGAGATCGCCGGCCTGATCCGCAGCGGCGTGCTCGCCCCCGGCCAGAAGGTCCCCTCGGTGCGGCATGCCAGCC GCACTTACGGGGTCAGCGCTTCGACGGTGTTCCAGGCTTATTACCTGCTGGAGGACCGCGGCCTGATCGTCGCCCGCGCGCGCTCGGGTTACTTCGTCCG CGAACACGTACAGCGCGCCCTGGCCGAGCCGGAGATCGCCCGCCACGACGCGCAGACCACCGAGGTGGACGTCAGCGAACTGGTGTTCTCGGTGCTCAGC TCGATCAAGGACCCGGACACCGTGCCCTTCGGCTCGGCCTTCCCGGCGCCGGAGCTGTTCCCCCTGCCGCGCCTGGCGCGCTCCATGGCCCATGCCGTGC GCGACATGGACCCGCGTTCGGTGGTCGCCGACCTCGCCCCGGGCAGCCATGCGCTGCGCCGACAGATCGCCCTGCGCTACATGGTCGGCGGCATGCCCCT GCCGGTGGAGGAACTGGTGGTCACCAACGGCGCACTGGAAGCGCTCAACCTGTGCCTGCAGGTGGTGACCCAACCCGGCGACCTTGTGGCCATCGAAGCC CCGGCCTTCTACGCCAGCCTGCAGGTGCTGGAACGGCTGAAACTGAAGGCGGTGGAAATCCCCGTGCACCCACGCGAAGGCATCGACCTGGATGTGCTCG CCGACAGCCTGGCGCGCCTGCCGATCAAGGCCTGCTGGTTCATGAGCAACTTCCAGAACCCGCTGGGCGCCAGCATGGCCGAGGACAAGAAGCGCGCCCT CGCCGCGTTGCTGGCCCAGCACCAGGTGCCACTGATCGAGGACGACGTCTACGCCGAACTGTACTTCGCCGCCCAGGCGCCCAAGCCGGTGAAGGCCTTC GACAGCGAAGGGCTGGTGATGCACTGCAGCTCCTTCTCCAAGAGCCTGGCGCCCGGTTACCGCGTCGGTTGGGTGGCCGGCGGGCGCTACGCCGAGCAGA TCGAGCGGCTCAAGCTGATGACCAGCCTGTCGGCCTCGGTGCCGGCCCAGGCCGCCATCGCCGACTACCTGCAGCACGGCGGCTACGACCGCCACCTGCG CAAGCTGCGCCACGCGCTGGAAAGCCAGCAGCACGCGATGCTCGCAGCCGTGGCCCGGCACTTCCCCGCCGCCACCCGCGTCACCCGGCCCAGCGGCGGC TACTTCCTGTGGCTGGAGCTGCCCGAGCACATCGACGCGCTCAAGCTGTTCCAGCTCGCCCATGCCCAGGGCATCAGCCTCGCGCCGGGGCCGATCTTCT CGGCGACAAGGCGCTTCGGCCACTGCCTGCGCCTGAACTACGGCCACCCGTGGACGACGGTCAGCGAACAGGCCATGGAAACCCTCGGGCGGATCATTCA TTCGCTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCGAACGCCTCCGTTTGACTGATCCGCACATTCGGAAACGATCTGTACCTGTGCGGCAAGTTGTCGCAGGAATAGGCTGTCAGGCAGAACACCCGGAC GAGGGAAGCTGCCATGGATGCCGAAGGCCTGATGATCCTGCTCACAGTGAGCGCCGCACTTGGCGTGCACCTGTGGGTGCGCTGGTACCTGCGGCGCGGG ATGCTGCCGCGTGGGGAGCAATGGCTGGCATGAACCCTCACCTGCAGGAGCGGGCCATGCNNNNNNTCGCGCCCATGGGGCGCTCCTACGGCAAAGTCCC TCGTCCTACGGCCGATACAGGTGCGCATGCTCCGCGCTGTAAAGCGACGAATCAGCAAACCCCTCCGCCCCCAGCACCTTGCCCACCAGGATCAGCGCCG TGCGCCGGAAGCCCTTGGCCTGAGCCTTGGGCAGGATGTCGCCGAGGGTGCCGGTGACCTGGTCCTGGTCCGGCCAGCTGGCGCGATGGATCACCGCGAT
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MKRYEKFADEIAGLIRSGVLAPGQKVPSVRHASRTYGVSASTVFQAYYLLEDRGLIVARARSGYFVREHVQRALAEPEIARHDAQTTEVDVSELVFSVLS SIKDPDTVPFGSAFPAPELFPLPRLARSMAHAVRDMDPRSVVADLAPGSHALRRQIALRYMVGGMPLPVEELVVTNGALEALNLCLQVVTQPGDLVAIEA PAFYASLQVLERLKLKAVEIPVHPREGIDLDVLADSLARLPIKACWFMSNFQNPLGASMAEDKKRALAALLAQHQVPLIEDDVYAELYFAAQAPKPVKAF DSEGLVMHCSSFSKSLAPGYRVGWVAGGRYAEQIERLKLMTSLSASVPAQAAIADYLQHGGYDRHLRKLRHALESQQHAMLAAVARHFPAATRVTRPSGG YFLWLELPEHIDALKLFQLAHAQGISLAPGPIFSATRRFGHCLRLNYGHPWTTVSEQAMETLGRIIHSL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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