Pseudomonas sp. 21, UB43_RS19240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 21 contig7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCACCCGCTGCAGGCGCTGGTCTCCGAGCCACTGAAACCCATCATCGACAGCGTGATCATGTCCAACGCCGTGCACGGCTACATCAGCCAGTCGGAC AAGGGCGACCTGGTCATCGGCGCCGGCATCGACGGTTACAACGGCTACGGCCAGCGCGGCTCCTACCCGGTGATCGAGCACACCCTGCAGGCCATCGTCG AGATGTTCCCGGTGCTGTCCCGCGTGCGCATGAACCGCCAGTGGGGCGGCATCGTCGACACCACCCCGGACGCCTGCCCGATCATCGGCAAGACCCCGGT GAAGAACCTGTTCTTCAACTGCGGCTGGGGCACCGGCGGCTTCAAGGCCACGCCCGGCTCGGGCAACGTCTTCGCCGCCACCCTCGCCAAGGGCGAGCCG CACCCGCTGGCCGCGCCCTTCTCCATCGAACGCTTCCACACCGGCGCGCTGATCGACGAACACGGCGCCGCCGCCGTCGCGCACTAAGAGGGCCACGACC
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| DNA Sequence for Gene |
>UB43_RS19240
ATGCTGAATATCTTCTGCCCTCACTGCGGCGAGCTGCGTTCCGAAGAGGAATTCCACGCCAAGGGCCAGGCGCACATCCCGCGCCCGCTCGACCCCGCCG CCTGCACCGATGCCGAGTGGGGCGACTACATGTTCTTCCGCGACAACCCGCGCGGCATCCACCACGAGCTGTGGGTGCACGCCGCCGGCTGCCGCCAGTA CTTCAACGTCACCCGCCACACGGTGACCTACGAAATCCTCGAAACCTACAAGATCGGCGAAAAACCCAGCGTCACCGCCGCCGATGCTGACACCGAAAAG CAAGCCGCCGTCCAGCCCGCCGTGGAGAAGGCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAGCCAGATCAATCGCCTGTCCCGTGGCGGTCGCATCGACCGCAACAAGCCGCTGACCTTCAGCTTCAACGGCCAGAGCTACCAGGGCTTCGCCGGTGA CACCCTGGCCGCCGCCCTGCTGGCCAACGGCGTCGACATCCTCGGCCGCAGCTTCAAGTACTCGCGCCCGCGCGGCATCGTCGCCGCCGGCGCCGAAGAG CCCAACGCCATCCTGCAGATCGGCTCGCGCGAATCCACCCAGGTGCCCAACGTGCGCGCCACCCAGCAAGCGCTGTACAACGGCCTGGTGGCCACCGCCA CCAACGGCTGGCCGAACGTACAGAACGACCTCATGGGGATCTTCGGCAAGGTCGGCGGCAAGCTGATGCCGCCCGGCTTCTACTACAAGACCTTCATGTA CCCGCAGTCCATGTGGCTGACCTACGAGAAGTACATCCGCAAGGCCGCCGGCCTTGGCCGCGCGCCCACCGAAGTGGACCCGGACAGCTACGACTGGATG
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| Amino Acid Sequence |
>sarcosine oxidase subunit delta
MLNIFCPHCGELRSEEEFHAKGQAHIPRPLDPAACTDAEWGDYMFFRDNPRGIHHELWVHAAGCRQYFNVTRHTVTYEILETYKIGEKPSVTAADADTEK QAAVQPAVEKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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