Pseudomonas sp. 21, UB43_RS16330

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00088
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 2123 2788 0.0
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 108 8.2E-7
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 2671 2789 1.71E-35
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1607 1704 2.2E-7
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 130 4.41E-20
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1243 1377 3.3E-18
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 2001 2103 1.54531E-11
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 2497 2637 6.15E-21
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1851 1948 1.7E-5
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2458 2476 2.4E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1249 1334 1.7E-11
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1391 1528 3.8E-13
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 2673 2782 3.09991E-30
MobiDBLite mobidb-lite consensus disorder prediction - - 1549 1604 -
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 2313 2497 3.4E-60
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1607 1728 5.36E-27
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1078 1204 5.5E-28
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 2673 2784 5.9E-27
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 2000 2096 3.9E-5
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1391 1512 1.45E-13
Coils Coil Coil - - 2211 2231 -
Gene3D G3DSA:3.40.50.2300 - - - 2673 2792 3.6E-39
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1851 1971 6.54E-26
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 2503 2642 1.1E-20
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 2357 2498 3.3E-20
MobiDBLite mobidb-lite consensus disorder prediction - - 1816 1846 -
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1079 1168 3.45709E-9
SMART SM00260 chew_2 IPR002545 CheW-like domain 2490 2641 3.5E-33
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 14 136 2.9E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1853 1953 5.5E-14
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1609 1707 4.2E-14
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1247 1348 6.63685E-6
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1247 1368 6.54E-19
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2314 2495 1.44E-36
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 433 554 1.12E-12
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1247 1343 0.11
Coils Coil Coil - - 2008 2028 -
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1079 1183 3.4E-4
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2402 2416 2.4E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1850 1980 4.0E-28
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1607 1705 8.70336E-15
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1081 1170 2.6E-14
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 2002 2102 1.02E-19
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 2173 2312 3.4E-10
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 2361 2497 1.5E-14
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 2579 2639 2.5E-19
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2671 2784 2.3E-35
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2482 2495 2.4E-10
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1607 1735 1.4E-27
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1079 1206 2.9E-29
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1851 1949 4.72122E-13
CDD cd16916 HATPase_CheA-like - - 2320 2495 3.69728E-81
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 2002 2100 8.6E-16
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1998 2121 8.4E-23
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2311 2497 1.4E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.