Pseudomonas sp. 21, UB43_RS15810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10410
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002811 DnaG IPR030846 DNA primase DnaG, bacteria 2 664 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 489 527 -
Pfam PF10410 DnaB-helicase binding domain of primase IPR019475 DNA primase, DnaB-helicase binding domain 373 425 8.2E-10
Pfam PF08278 DNA primase DnaG DnaB-binding IPR013173 DNA primase DnaG, DnaB-binding domain 540 662 1.9E-21
Gene3D G3DSA:3.90.980.10 - IPR037068 DNA primase, catalytic core, N-terminal domain superfamily 114 242 1.2E-46
Pfam PF08275 DNA primase catalytic core, N-terminal domain IPR013264 DNA primase, catalytic core, N-terminal 126 254 2.3E-41
MobiDBLite mobidb-lite consensus disorder prediction - - 504 525 -
PANTHER PTHR30313 DNA PRIMASE - - 1 666 0.0
SMART SM00766 dnag_dnab_bind_seq8d IPR013173 DNA primase DnaG, DnaB-binding domain 536 664 4.6E-29
Gene3D G3DSA:1.20.50.20 DnaG, RNA polymerase domain, helical bundle - - 371 428 1.2E-21
SMART SM00400 primzinc3 IPR002694 Zinc finger, CHC2-type 36 90 2.3E-36
Gene3D G3DSA:1.10.860.10 DNAb Helicase; Chain A IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal 523 673 5.5E-30
Pfam PF01807 CHC2 zinc finger IPR002694 Zinc finger, CHC2-type 6 100 1.2E-41
MobiDBLite mobidb-lite consensus disorder prediction - - 646 674 -
SUPERFAMILY SSF56731 DNA primase core - - 116 427 3.92E-109
CDD cd03364 TOPRIM_DnaG_primases IPR034151 Bacterial DnaG primase, TOPRIM domain 261 342 1.51519E-36
Gene3D G3DSA:3.90.580.10 - IPR036977 DNA Primase, CHC2-type zinc finger 2 101 6.8E-36
Hamap MF_00974 DNA primase [dnaG]. IPR030846 DNA primase DnaG, bacteria 4 665 29.672264
MobiDBLite mobidb-lite consensus disorder prediction - - 436 460 -
Gene3D G3DSA:3.40.1360.10 - - - 243 370 4.4E-43
NCBIfam TIGR01391 JCVI: DNA primase IPR006295 DNA primase, DnaG 5 419 0.0
SMART SM00493 toprim5 IPR006171 TOPRIM domain 261 332 2.3E-20
Pfam PF13662 Toprim domain IPR006171 TOPRIM domain 261 329 5.0E-18
FunFam G3DSA:3.40.1360.10:FF:000002 DNA primase - - 243 370 2.2E-54
MobiDBLite mobidb-lite consensus disorder prediction - - 646 662 -
SUPERFAMILY SSF57783 Zinc beta-ribbon - - 4 101 4.25E-37
SUPERFAMILY SSF117023 DNA primase DnaG, C-terminal domain - - 535 664 1.09E-26
FunFam G3DSA:3.90.580.10:FF:000001 DNA primase - - 1 101 1.3E-42
FunFam G3DSA:3.90.980.10:FF:000001 DNA primase - - 111 242 4.2E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.