Pseudomonas sp. 21, UB43_RS14390 (fliA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGTTCAGCGACATCAGCGACAACATCGACGTGCTGGTGGTGGACACCGCCGCCGGCATCGGCGATTCGGTGGTGAGCTTCGTCCGTGCCGCCCAGGAAG TGCTGCTGGTCGTTTGTGATGAACCCACGTCCATCACCGATGCCTACGCTTTGATCAAGCTGCTCAACCGCGACTACGGCATGACCCGTTTCCGCGTGCT GGCGAACATGGCGCACAGCCCCCAGGAAGGCCGCAACCTGTTCGCCAAGCTGACCAAGGTCACCGACCGCTTCCTGGATGTGGCGCTGCAGTACGTCGGC GCCATTCCCTACGATGAGTCGGTGCGCAAGGCCGTGCAGAAGCAGCGTTCGGTGTATGAGGCGTTCCCGCGCAGCAAGGCTTCCCTGGCCTTCCGTGCGG TGGCGCAGAAGGTCGACAGCTGGCCGCTGCCGGCCAACCCACGAGGGCACCTGGAGTTCTTCGTCGAGCGCCTGGTGCAACATCCCACGGGTTCGGCCGT
DNA Sequence for Gene
>UB43_RS14390 |fliA
ATGACCGCGGCCTCCGGAGCGCGTATGTACAGCAAGGCACAGGCGCACAACTCCCAGGAACTGCTGATCCAGAAACACGCTCCGCTGGTGAAGCGCATCG CCTACCACCTGCTTGGCCGTCTGCCGGCCAGCGTGCAGGTGGAGGACCTGATGCAGGCCGGCATGATCGGCCTGCTGGAGGCTGCGAAGAAATACGATCA GGGCAAGGGCGCGAGCTTCGAAACCTATGCCGGCATCCGCATCCGCGGCGCCATGCTCGACGAGGTGCGCAAGGGCGACTGGGCCCCGCGTTCGGTCCAC CGCAACACCCGCATGGTCAGCGACGCCATCCGCGCCGTCGAAGCGCGCACGGGACGCGACGCTAAAGATCAGGAGGTTGCTGCCGAACTCAATATGAGCC TCGAAGATTATTACGGCATCCTCAGCGACACCCAGGGCAGCCGTCTGTACAGCTTCGATGACATGTTGCAGGACGGCGACCAGGGCGGCGGCTTTGCCGA AGACGCATCGCACCACGACAACGAGCCATCCCATGGCCTGGAAGACGAGCGCTTCCAGGCGGCCCTGGCTGACGCCATCACCAAGCTGCCCGAGCGCGAG CGACTGGTGCTGGCCCTGTACTACGACGAGGAACTCAACCTCAAGGAGATCGGCGAAGTGCTGGGCGTCAGCGAGTCCCGCGTCAGCCAGCTGCACAGCC AGTGCGCCGCGCGACTGCGTTCGCGACTGGCGGAGTGGCGCGCTCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCATCGGGTAGTTTCGCGTCGGCTGCTTCTGAGAGGCGGTGCTGAAGGGATTTTCCTTAGGCAAGTTATAGGCTTACGAATTTTTGGGTGACGTTCCTTT GACGCGCCCACAGCAAAGAGCGCACGACGCTCGATGAATTGACGGCACGCCCGCCAGGGCGCGTTTGGTATCGATGGAGGCAGGTTTGGACAAGAACATG AAAATTCTCATCGTGGACGACTTTTCCACGATGAGGCGCATCATCAAGAACCTCCTGCGAGACCTGGGGTTCACCAACACCGCAGAAGCCGACGATGGCA CCACTGCGCTGCCGATGCTGCACAGCGGCAACTTCGACTTCCTCGTTACCGACTGGAACATGCCCGGCATGACCGGCATCGACCTGCTGCGTGCGGTCCG CGCCGACGAGCGCCTCAAGCACCTGCCGGTGCTGATGGTCACCGCCGAAGCCAAGCGCGACCAGATCATCGAAGCGGCCCAGGCCGGGGTCAACGGCTAT
Amino Acid Sequence
>flagellar biosynthesis sigma factor
MTAASGARMYSKAQAHNSQELLIQKHAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDQGKGASFETYAGIRIRGAMLDEVRKGDWAPRSVH RNTRMVSDAIRAVEARTGRDAKDQEVAAELNMSLEDYYGILSDTQGSRLYSFDDMLQDGDQGGGFAEDASHHDNEPSHGLEDERFQAALADAITKLPERE RLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLAEWRAR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site