Pseudomonas sp. 21, UB43_RS12885

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGTGCAGTAGGCGGCCTCACCGGCTCCCTGGGCGGCGCCACTGGCGGCAGCAATCCGGTAGGTGGCCTGGTCAGCGGTGTGACCGGCGCAGTAGGCGG CCTCACCGGCTCCCTGGGCGGCGCCACTGGCGGCAGCAACCCGGTGGGTGGCCTGGTCAACGGCGTAGCCGGCACCGTCGGCGGTGTGACCAGCAGCCTC ACCGGTGGCGGCGGCCTGGTCGCCGGGGCAGGCGTGGGCATCGGCAGCAACACCCAGGGTTCGGGCGTGGCAGTCGGCGCAGGCGCCGGTACGACTGGCG GTACCAGCGGCCAGGGAGGCCTGCTGGGCAATACGCTGGGCGCCGTGGGTGGCGCGCTGGGTGGTGTGACCGGCGGACTGGGTGGTGGATTGGCGATCGG TACGCCCAAGCAATAATCCGAATTACACCCATACTGTGGTTACCAGGAGCCGCCCACGGCTCCTGGTCCTTTATCGAAGTCGGTCTCATGGAGGAGCCAG
DNA Sequence for Gene
>UB43_RS12885
ATGCGCAAACTTGCTGTCCTGCCCCTGTTGTTGGCTGCACCTTTCGCCTGGGCCGAGCGCCCTATCCAGCTCCCCGGCTCCGATATCGAACAGACACTCC CCCGCCCCAACCTCCCTGGCGGCGACATTCGCCCCAAGGCCCCCAAGGTCACTGCGCCGGAACCTTCGGCCACCCAGCCCGCCCAGATCCTCCAGCAGCG CATCCGCATCAAGCGCATCGAACTGGCCGGCGGCAAGCACTATCCCGTCGAAACCTGGAAACCCCTGCTGGAGCCCCTGACCAAGCGCACCATCCAGGTC AGCGAACTGGTGGCGGCGGCCAAGGCCATCACCCAGCGCTACCAGGACGACGGCTACTTCATCTCCTTTGCCTACGTGCCCAACCAGGACTTCCGCAGCG GTGTCGCGCGCATCGTGCTGGTCGAGGGCCACATCAGCCAGGTGCGCGCCGCGGGCGACCTGGGTGTCCACCAGATGCGCGTGGACCGCTGGATCGAGAA GCTGAAGGCGGAAAAGCCCCTGACCCGCGAGAGCTTCGAGCGCTTCAGCGTGCTGATGAGTCGGGTGCCCGGCATGCAGATGGCCATGGCGCTCAACCCG CCCACCACCAGCGACGGCGGCGCCGTGCTGGAGCTGGCCGGCAAGCAGAAGCGCTTCGACACCGGGATGAACCTCGACTCGCGCCGCGGCGAGCAGCGCG GGCTGTTCAACGCCGAGGTGATGTCGATGCTCGGCTGGGGCGAGCAGCTGCAGTTCAGCTACCTGTACCCACCGGGCGACGACCACGAGTACTACCGCGC CTGGAACTACAGCCAGCTGCTGGGCGACAACGGCGTGCAACTGCTGGCCGGCTACAGCAAGTACAACTCGCGCCCCGGCGAGAACCTGCGCCTGGCCAGC GGCCTGGAGTTCGAACGCAAACGGCAGAACGAACGGGTCAGCGCCGGCCTGGGCATTCCGCTGGTACTGCGCCGCGACCTCACCTGGGACCTCAACCTGC GTGGCTATACGGTCAACGACACCAGCACCTACGACCTGGTCTATCCGGCCATCCCCTTCCGCATCGAACAGAAGAGCAAGCTGCGCGTGGTGGGGATCGA AACCGTCGTCCAGCAGTTCGCCGAGAAGCGCGTGCGCGCCGGCAGCGTGGCGGTTTATCAGGGGTTGAACGGCATGGGCGCGGAAGCGCCGGAGCCGATC AAGAAGAACTTCACCCGCCTGCTCGGCTTTGGCGCACAGCAGGACCAGTTCGGCTCCAACTGGCAGGGCGTGGTGAGCGCCGCCTTCCAGTGGAGCGACG ACGTGCTGCCCGACTCCGAGCAGGTCACCTACGGCGGCGGCAACTTCGGCCGCGGCTATCCGGACGACCAGGCCAGCGGCGACAAGGGCTGGGGCGCCTC GTACGAGGTGAACTATTCCTTCCTGCGGCAGAGCGTAGTGCTCAACCAGATCCAGCCCTACTTCGTCGTCGACACCGCGCGCACCCGCTACAACCAGGAC GGCCTGAGCGAAGGCAAGCTCGGCTCGGCGGCGCTGGGCGTGCGCTTCTCCAACCGCAAGCACTATCTGGTGTCGATGGAGGTCGCCAAGCCGTTCGGCG ACCGCGCACTGGACAACAACGAACGCAGCCCGCGGCTGAACTTCGCCTTCAGCTATCAGATCCCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGGTTTCCCTTGCCGAGAGTCACTGCGCCGGGCGCAGTGAATCGATATAGGTGCGCAGCGAATAGCCCAGCTTGGGTTCGAGCTGGCCGACACGCTTCTT CAAGCCGCGCAGGTTCAGCTCCTGGTCCAGCTCGGCAGGGACGAAGACGATCACATTGCCCTCGGGCACCGGGCATTCCCAGTAATGCCGGTTGAAGCGC CCGCGCAGCAGCGCGGCGCCCAGCGGCCGGCCATCATCGGTACTCCACTGGTTGATCACCAGCCAGCCGCCCGGCCGCAGGCGCTCGCGACAGGCACCGA GGAAATCCCAGCCGATATGCGCCGGCGCCGGCCCGGTATCGGTGTAGAGATCGAGGAAGATCAGGTCCGCCGGCTCGCACTCGGCCAGTTCCTGCACGGC GTCGCCGATACGCAGGTTCAGACGTTCATCCTCCACCAACCCGAGGTGTTCACGGGCCAGGCGCGGGATGGACGGGCGCAGCTCGATGGCTTCCACCTCC
Amino Acid Sequence
>POTRA domain-containing protein, ShlB-type
MRKLAVLPLLLAAPFAWAERPIQLPGSDIEQTLPRPNLPGGDIRPKAPKVTAPEPSATQPAQILQQRIRIKRIELAGGKHYPVETWKPLLEPLTKRTIQV SELVAAAKAITQRYQDDGYFISFAYVPNQDFRSGVARIVLVEGHISQVRAAGDLGVHQMRVDRWIEKLKAEKPLTRESFERFSVLMSRVPGMQMAMALNP PTTSDGGAVLELAGKQKRFDTGMNLDSRRGEQRGLFNAEVMSMLGWGEQLQFSYLYPPGDDHEYYRAWNYSQLLGDNGVQLLAGYSKYNSRPGENLRLAS GLEFERKRQNERVSAGLGIPLVLRRDLTWDLNLRGYTVNDTSTYDLVYPAIPFRIEQKSKLRVVGIETVVQQFAEKRVRAGSVAVYQGLNGMGAEAPEPI KKNFTRLLGFGAQQDQFGSNWQGVVSAAFQWSDDVLPDSEQVTYGGGNFGRGYPDDQASGDKGWGASYEVNYSFLRQSVVLNQIQPYFVVDTARTRYNQD GLSEGKLGSAALGVRFSNRKHYLVSMEVAKPFGDRALDNNERSPRLNFAFSYQIP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site