Pseudomonas sp. 21, UB43_RS11485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 21 contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAAGGCCGCCGCCAGCGAACCCCAGGCGCACTACTACCTGGGCCAGATCTACCGCCGCGGCTTCCTTGGCCAGGTCTACCCGCAGAAAGCCGTGGACC ATCTGATCATCGCCGCCCGCGCCGGCCAGGCCAGCGCCGACATGGCCCTCGCCCAACTCTATTCGCAGGGTCGCGGCATCCGCCCGAACCTGGTCAACGC CTACGTCTTCGGCGAACTCGCCCAGCGCCAGCAGGTGCCCACCGCCAGCGACCTGATGGCGCAGATCGAACCGCAGATCCAGCCGGCCGACCGCAGTGCG GCCCAGCAGTTGCTCAAGCGTGAAGAACAGGCTCGCGGCGCCAACTGGCAAGCCACCGTCAGCCTTCTGCAGAACAACCAGGAACAAGAAAATCTATGAA GCGCACCGACCCGATGACCACCCCGCTGTTTGCTCTCGTCGATGGAGTTCAGCCGCGCGCTCTGGCTTCCGCTGTCCGCCGCGCCCGTCTGTTCCCCGCC
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| DNA Sequence for Gene |
>UB43_RS11485
ATGCTCGGCGTTGGCCTGAGCCTCGCCGGCACCCTGTTCGGCAGCCTCGCCCACGCGGCGGAAGAGCCACCGAAGAACTTCGGCGTCGACATCAAGGTGA CCGCCGAATCCGAGGACGACCGTGACCTGGGCACCGCCCACGGCGGCGACCTCAATGGCATCGGCCTGGATGTGCGCCCCTGGGCCTTCGGCCAATGGGG CGAGTGGAGCGCCTACGTGATGGGCCAGGCGGTTGCCGCCACCGACACCATTCAGACCGACACCCTGCAGAACGACGACGTCAACAACGACAGCAGCGGT CGCAGCGACAACAAGCGCGAGCCCGACGACGCCTACCTCGCCCTGCGCGAATTCTGGGTGGACTACGCCGGCCTCACCCAGTACCCCGGCGAGCACCTGC GCTTCGGTCGCCAGCGCCTGCGCGAAGACAGCGGCATGTGGCAGGACACCAACATCGAGGCCCTCAACTGGACCTTCGACACCACCCTGCTGCGCGCCCA CCTTGGCGCCGCCCAGCGCTTCTCCGACTACCGCACCGACATCACTGACCTGGCGCCGGACGACAAGGACCGCACCCACGTCTTCGGCGACATCTCCACG CAGTGGATGCCCCAGCACTGGGTCGGCCTGCGCGTGCACCACGCCGACGACAGCGGCAGCCTGCCGGACCCGGGCGAGACCGTCGACTCGCTGGACAAGC GCTCCACCGGCGACCTCACCTGGGTTGGCATCGAGGCCAACGGCGACGGCTACAACTGGCGCTCGCAGATGCCCATCAACTACTGGGCCAGCGCCACCTG GCTCACCGGTAACCGCGACCGCCTGACCACCGTCCCGGTGAACGGCGACCGCGTCGCCGCCGGCAAGCAGAGCGGCGACGTGGATGCCTACGGCGCGGAC CTGGGCCTGCGCTGGAACATCGACGAGCAGTGGCGCGTCGGCGGCGCCTACGCCCGTGGCAGCGGCGGCGGCAAGAACGGCGAAGACCAGTTCGAACAGA CGGGCCTGGAGAGCAACCGCTCCAACTTCACCGGCACCCGCGCCCGCGCACACCGCTTCGGCGAAGCCTTCCGCGGTGAGCTGTCGAACCTTGAGGCCGC CACGCTGTTCGGCTCCTGGCAGCTGCGCGACGACTATGACGCCAGCGTCATCTACAACAAGTTCCGCCGCGTGGACAGCGATTCGGACATCGGCAACAGC GGCATCACCGCGCCGCTGGTGAATGACTCCAAGGACCTCGGCCAGGAAGTCGACCTGGTCGTCACCAAGTACTTCAAGCAGGGCCTGCTGCCGGCCTCGA TGAGCCAGGCGATCGACGAGCCGTCGGCGCTGATCCGCTTCCGTGGCGGTGTGTTCAAGCCCGGCGACGCCTACGGCAGCCATGTCGACTCGACCATGCA CCACGCCTTCGTCGATGTGATCTGGCGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACTGTAGCGATGAACATCCGTCAGCTACCCGCGCTCGCACTCTGCCGTTCCCGGCGCGTAGCCGGGTGCCTGGCGGATGACCGCGCGCAAGGAGACAA GGCCATGAACCGCCACCCGTTACACGCCCTGCCGCTGACCGCGCTGCTGCTCGGCGGCCTGCTCAGCGCCGGCGCACCGGTCTGGGCGGCGCAGCCCGCG GCCAAGGCCGAGAGCAGTGCCAAGGCCGCCGCGAAAGGCAGCGAAGAGAAAACCGCCGAGGAACATCCCGGCGCCGAGCCCGGCAAGACCCAGACGCTGA AGGAGTCCGGCAACTACACCGTCACCGCCGCCCCCAGCGAGCCGCTGCACCTGGAGCCGCCCAAGCTGCCCGACCTCACCGGCTACACCGCCGAAGCGGT GGAGAAGAAGATCGAGCGCAACAAACGCGGCCAGGCCCACATCGAACGCATGGTCCAGCAGCAGCCGCTGAAGGAATTCACCGGCGGCAAGAACCGCCTT
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| Amino Acid Sequence |
>alginate regulatory protein
MLGVGLSLAGTLFGSLAHAAEEPPKNFGVDIKVTAESEDDRDLGTAHGGDLNGIGLDVRPWAFGQWGEWSAYVMGQAVAATDTIQTDTLQNDDVNNDSSG RSDNKREPDDAYLALREFWVDYAGLTQYPGEHLRFGRQRLREDSGMWQDTNIEALNWTFDTTLLRAHLGAAQRFSDYRTDITDLAPDDKDRTHVFGDIST QWMPQHWVGLRVHHADDSGSLPDPGETVDSLDKRSTGDLTWVGIEANGDGYNWRSQMPINYWASATWLTGNRDRLTTVPVNGDRVAAGKQSGDVDAYGAD LGLRWNIDEQWRVGGAYARGSGGGKNGEDQFEQTGLESNRSNFTGTRARAHRFGEAFRGELSNLEAATLFGSWQLRDDYDASVIYNKFRRVDSDSDIGNS GITAPLVNDSKDLGQEVDLVVTKYFKQGLLPASMSQAIDEPSALIRFRGGVFKPGDAYGSHVDSTMHHAFVDVIWRF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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